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@spang-lab

The Spang Lab

Statistical Bioinformatics Department, University of Regensburg, Germany

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  1. TenSIR TenSIR Public

    SIR model parameter estimation using a novel algorithm for differentiated uniformization.

    Python 6 1

  2. dabih dabih Public

    dabih is a secure way to upload and share data, end-to-end encrypted, using the WebCrypto API

    JavaScript 6 2

  3. LearnMHN LearnMHN Public

    Forked from StefanDevAccount/LearnMHN

    A Python package to work with Mutual Hazard Networks (MHN)

    Python 4 2

  4. adadmire adadmire Public

    Python package for detecting anomalies in tabular datasets using Mixed Graphical Models

    Python 3

  5. tissueResolver tissueResolver Public

    tissueResolver is a package for converting bulk RNA-seq datasets into virtual tissues using information from similar single cell datasets by assigning weights to true single cells, maintaining thei…

    R 3

  6. zeroSum zeroSum Public

    Forked from rehbergT/zeroSum

    R-package for elastic net regularized regression with zero sum constraint

    C++ 2

Repositories

Showing 10 of 29 repositories
  • urnc Public

    Uni Regensburg Notebook Converter

    spang-lab/urnc’s past year of commit activity
    Python 1 MIT 0 9 0 Updated Mar 11, 2025
  • mdrb Public

    Metabodecon Rust Backend for R

    spang-lab/mdrb’s past year of commit activity
    Rust 0 GPL-3.0 0 1 0 Updated Mar 11, 2025
  • metabodecon Public

    Deconvolution of 1D NMR spectra using MetaboDecon1D followed by alignment of the data by the speaq package and some additional postprocessing resulting in an aligned data matrix of aligned signal integrals

    spang-lab/metabodecon’s past year of commit activity
    R 2 GPL-3.0 0 0 2 Updated Mar 10, 2025
  • dabih Public

    dabih is a secure way to upload and share data, end-to-end encrypted, using the WebCrypto API

    spang-lab/dabih’s past year of commit activity
    JavaScript 6 MIT 2 0 0 Updated Mar 10, 2025
  • harplication Public

    An R package tooling harp in order to apply it to simulation and real world deconvolution scenarios

    spang-lab/harplication’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 5, 2025
  • harp Public

    Harp is an R package that estimates reference profiles and cell compositions for deconvolution of bulk transcriptomic data

    spang-lab/harp’s past year of commit activity
    R 2 MIT 0 0 0 Updated Feb 26, 2025
  • LearnMHN Public Forked from StefanDevAccount/LearnMHN

    A Python package to work with Mutual Hazard Networks (MHN)

    spang-lab/LearnMHN’s past year of commit activity
    Python 4 MIT 4 0 0 Updated Feb 26, 2025
  • CIBERSORTx_application Public

    This repository tools the CIBERSORTx docker container as needed to reproduce the results in HARP: Platform Independent Deconvolution Tool (Nozari et al.)

    spang-lab/CIBERSORTx_application’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Feb 26, 2025
  • FastRet Public

    FastRet is an R package for predicting retention times in liquid chromatography. It can be used through the R console or through a graphical user interface.

    spang-lab/FastRet’s past year of commit activity
    R 0 0 0 0 Updated Feb 8, 2025
  • tissueResolver Public

    tissueResolver is a package for converting bulk RNA-seq datasets into virtual tissues using information from similar single cell datasets by assigning weights to true single cells, maintaining their molecular integrity. Virtual tissues can be analyzed in a similar way as conventional single cell datasets.

    spang-lab/tissueResolver’s past year of commit activity
    R 3 MIT 0 1 0 Updated Nov 13, 2024

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