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    29 repositories

    • urnc

      Public
      Uni Regensburg Notebook Converter
      Python
      •
      MIT License
      •0•1•9•0•Updated Mar 11, 2025Mar 11, 2025

    • mdrb

      Public
      Metabodecon Rust Backend for R
      Rust
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Mar 11, 2025Mar 11, 2025

    • metabodecon

      Public
      Deconvolution of 1D NMR spectra using MetaboDecon1D followed by alignment of the data by the speaq package and some additional postprocessing resulting in an aligned data matrix of aligned signal integrals
      R
      •
      GNU General Public License v3.0
      •0•2•0•2•Updated Mar 10, 2025Mar 10, 2025

    • dabih

      Public
      dabih is a secure way to upload and share data, end-to-end encrypted, using the WebCrypto API
      JavaScript
      •
      MIT License
      •2•6•0•0•Updated Mar 10, 2025Mar 10, 2025

    • harplication

      Public
      An R package tooling harp in order to apply it to simulation and real world deconvolution scenarios
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • harp

      Public
      Harp is an R package that estimates reference profiles and cell compositions for deconvolution of bulk transcriptomic data
      R
      •
      MIT License
      •0•2•0•0•Updated Feb 26, 2025Feb 26, 2025

    • LearnMHN

      Public
      A Python package to work with Mutual Hazard Networks (MHN)
      Python
      •
      MIT License
      •4•4•0•0•Updated Feb 26, 2025Feb 26, 2025

    • CIBERSORTx_application

      Public
      This repository tools the CIBERSORTx docker container as needed to reproduce the results in HARP: Platform Independent Deconvolution Tool (Nozari et al.)
      Shell
      •
      MIT License
      •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • FastRet

      Public
      FastRet is an R package for predicting retention times in liquid chromatography. It can be used through the R console or through a graphical user interface.
      data-sciencelcms
      R
      •0•0•0•0•Updated Feb 8, 2025Feb 8, 2025

    • tissueResolver

      Public
      tissueResolver is a package for converting bulk RNA-seq datasets into virtual tissues using information from similar single cell datasets by assigning weights to true single cells, maintaining their molecular integrity. Virtual tissues can be analyzed in a similar way as conventional single cell datasets.
      R
      •
      MIT License
      •0•3•1•0•Updated Nov 13, 2024Nov 13, 2024

    • tissueResolver-docs

      Public
      Vignette for the tissueResolver pipeline. We explain the most important steps in accessing the tissueResolver package via reproducing the case study of our publication
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • pamly-lib

      Public
      Rust
      •0•2•0•0•Updated Aug 29, 2024Aug 29, 2024

    • adadmire

      Public
      Python package for detecting anomalies in tabular datasets using Mixed Graphical Models
      Python
      •
      MIT License
      •0•3•6•0•Updated Jan 26, 2024Jan 26, 2024

    • urnc-example-course-public

      Public
      Public version of urnc-example-course (https://github.com/spang-lab/urnc-example-course) auto generated by urnc (https://github.com/spang-lab/urnc)
      Jupyter Notebook
      •0•0•0•0•Updated Dec 19, 2023Dec 19, 2023

    • urnc-example-course

      Public
      Example course demonstrating the use of urnc (https://github.com/spang-lab/urnc)
      Jupyter Notebook
      •0•0•0•0•Updated Dec 19, 2023Dec 19, 2023

    • TenSIR

      Public
      SIR model parameter estimation using a novel algorithm for differentiated uniformization.
      machine-learningmodelingscientific-computingmachinelearningparameter-estimationtensorssir-modelcovid-19covid19
      Python
      •
      GNU General Public License v3.0
      •1•6•0•0•Updated Dec 9, 2023Dec 9, 2023

    • imlui

      Public
      R package for hosting a web app to share, apply and understand statistical models and datasets.
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 7, 2023Oct 7, 2023

    • MHN

      Public
      R
      •4•1•0•0•Updated Mar 3, 2023Mar 3, 2023

    • lyra-lymmml-client

      Public
      JavaScript
      •
      MIT License
      •0•1•0•20•Updated Dec 31, 2022Dec 31, 2022

    • FastqPuri

      Public
      fastq quality assessment and filtering tool
      C
      •
      GNU General Public License v3.0
      •12•1•0•0•Updated Dec 10, 2022Dec 10, 2022

    • digger

      Public
      A simple R frontend for datatomb
      R
      •
      MIT License
      •0•0•0•0•Updated May 4, 2022May 4, 2022

    • datatomb

      Public
      a simple HTTP server for storing and retrieving data sets and their metadata
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated May 4, 2022May 4, 2022

    • DTD

      Public
      Loss-Function Learning for Digital Tissue Deconvolution
      R
      •2•2•0•0•Updated Apr 26, 2022Apr 26, 2022

    • IsoCorrectoRGUI

      Public
      A Graphical User Interface for the IsoCorrectoR package.
      R
      •1•1•0•0•Updated May 7, 2021May 7, 2021

    • IsoCorrectoR

      Public
      A Correction Algorithm For Natural Isotope Abundance Contributions
      R
      •3•1•0•0•Updated Jul 13, 2020Jul 13, 2020

    • miRA

      Public
      Objective-C
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated Jun 10, 2020Jun 10, 2020

    • lyra-client-library

      Public
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Jun 10, 2020Jun 10, 2020

    • lyra-api-server

      Public
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Jun 10, 2020Jun 10, 2020

    • zeroSum

      Public
      R-package for elastic net regularized regression with zero sum constraint
      C++
      •5•2•0•0•Updated Jun 3, 2020Jun 3, 2020