5 Pull requests merged by 1 person

• Add range for WorkflowExecution's has_input and has_output slots

  #2378 merged Mar 28, 2025

• Add range to has_input and has_output slot usage on StorageProcess

  #2377 merged Mar 28, 2025

• Add structured_patten syntax to instrument_used slot

  #2376 merged Mar 28, 2025

• Adjust ranges to WorkflowExecution subclasses was_informed_by slots to match structured_pattern_syntax

  #2375 merged Mar 28, 2025

• Add permissible values to support LCMS metabolomics

  #2370 merged Mar 27, 2025

8 Issues closed by 4 people

• `WorkflowExecution` slots `has_input` and `has_output` range should be `DataObject`

  #2371 closed Mar 28, 2025

• `StorageProcess`'s `has_input` and `has_output` should have range of `Sample`

  #2374 closed Mar 28, 2025

• `instrument_used` slot needs `structured_pattern` to match range defined of `Instrument`

  #2373 closed Mar 28, 2025

• `WorkflowExecution` subclasses `was_informed_by` slots should match subclass of appropriate `DataGeneration`

  #2372 closed Mar 28, 2025

• Add permissible values to `FileTypeEnum` to support LC/MS Metabolomics data

  #2366 closed Mar 27, 2025

• `berkeley-schema-fy24`: `make squeaky-clean all` output begins with error message about missing file `local/gold-study-ids.yaml`

  #2177 closed Mar 27, 2025

• `gen-prefix-map` on pre-materialized schema fails due to multiple keys/identifiers (`nucleotideSequencing__id` and ` NucleotideSequencing_id`) under linkml 1.8.6+

  #2345 closed Mar 26, 2025

• deprecate `sample_state_information`

  #2353 closed Mar 24, 2025

4 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• implement UCUM for units in nmdc schema

  #1257 commented on Mar 25, 2025 • 0 new comments

• make slot usage range match structured syntax patterns

  #2238 commented on Mar 27, 2025 • 0 new comments

• mark sample_state_information to be deprecated

  #2354 commented on Mar 26, 2025 • 0 new comments

• Draft: add mixing slot & range of MixingProcess

  #2356 commented on Mar 24, 2025 • 0 new comments