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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 30 8

  2. NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 81 repositories
  • mg_annotation Public

    Metagenome Annotation Workflow

    WDL 4 7 3 2 Updated Mar 27, 2025
  • nmdc-status-website Public

    Static web page(s) used to display messages during outages and other special events

    HTML 1 0 2 0 Updated Mar 27, 2025
  • nmdc_automation Public

    Prototype automation

    Python 2 2 62 5 Updated Mar 26, 2025
  • external-metadata-awareness Public

    Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.

    Jupyter Notebook 0 0 29 5 Updated Mar 26, 2025
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    HTML 7 5 109 (3 issues need help) 14 Updated Mar 26, 2025
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    Python 1 0 6 0 Updated Mar 26, 2025
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    Jupyter Notebook 6 CC0-1.0 0 7 3 Updated Mar 26, 2025
  • metadata-for-user-facility-template-transformations Public

    CLI tool to convert metadata submissions from the NMDC submission portal to user facility Excel templates

    Python 0 0 11 1 Updated Mar 26, 2025
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 30 CC0-1.0 8 358 (1 issue needs help) 11 Updated Mar 26, 2025
  • nmdc-server Public

    Data portal client and server for NMDC.

    Python 9 0 150 16 Updated Mar 26, 2025
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