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Bump the requirements group across 1 directory with 10 updates #2888

Merged
merged 1 commit into from
Mar 4, 2025
Merged

Bump the requirements group across 1 directory with 10 updates #2888

merged 1 commit into from
Mar 4, 2025

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@dependabot dependabot bot commented on behalf of github Mar 4, 2025

Bumps the requirements group with 10 updates in the / directory:

Package From To
numpy 2.1.2 2.2.3
numcodecs 0.13.1 0.15.1
setuptools-scm 8.1.0 8.2.0
lmdb 1.5.1 1.6.2
redis 5.1.1 5.2.1
pymongo 4.10.1 4.11.2
pytest-cov 5.0.0 6.0.0
pytest-doctestplus 1.3.0 1.4.0
h5py 3.12.1 3.13.0
pytest 8.3.3 8.3.5

Updates numpy from 2.1.2 to 2.2.3

Release notes

Sourced from numpy's releases.

2.2.3 (Feb 13, 2025)

NumPy 2.2.3 Release Notes

NumPy 2.2.3 is a patch release that fixes bugs found after the 2.2.2 release. The majority of the changes are typing improvements and fixes for free threaded Python. Both of those areas are still under development, so if you discover new problems, please report them.

This release supports Python versions 3.10-3.13.

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • !amotzop
  • Charles Harris
  • Chris Sidebottom
  • Joren Hammudoglu
  • Matthew Brett
  • Nathan Goldbaum
  • Raghuveer Devulapalli
  • Sebastian Berg
  • Yakov Danishevsky +

Pull requests merged

A total of 21 pull requests were merged for this release.

  • #28185: MAINT: Prepare 2.2.x for further development
  • #28201: BUG: fix data race in a more minimal way on stable branch
  • #28208: BUG: Fix from_float_positional errors for huge pads
  • #28209: BUG: fix data race in np.repeat
  • #28212: MAINT: Use VQSORT_COMPILER_COMPATIBLE to determine if we should...
  • #28224: MAINT: update highway to latest
  • #28236: BUG: Add cpp atomic support (#28234)
  • #28237: BLD: Compile fix for clang-cl on WoA
  • #28243: TYP: Avoid upcasting float64 in the set-ops
  • #28249: BLD: better fix for clang / ARM compiles
  • #28266: TYP: Fix timedelta64.__divmod__ and timedelta64.__mod__...
  • #28274: TYP: Fixed missing typing information of set_printoptions
  • #28278: BUG: backport resource cleanup bugfix from gh-28273
  • #28282: BUG: fix incorrect bytes to stringdtype coercion
  • #28283: TYP: Fix scalar constructors
  • #28284: TYP: stub numpy.matlib
  • #28285: TYP: stub the missing numpy.testing modules
  • #28286: CI: Fix the github label for TYP: PR's and issues
  • #28305: TYP: Backport typing updates from main
  • #28321: BUG: fix race initializing legacy dtype casts
  • #28324: CI: update test_moderately_small_alpha

... (truncated)

Commits
  • a274561 Merge pull request #28322 from charris/prepare-2.2.3
  • 5ab0f71 REL: Prepare for the NumPy 2.2.3 release [wheel build]
  • 010ad9b Merge pull request #28324 from charris/update-test_dirichlet_moderately_small...
  • 6338746 CI: update test_moderately_small_alpha [wheel build]
  • 56f8d5b Merge pull request #28321 from charris/backport-28290
  • 48515a3 MAINT: Update some testing files from main
  • 96ca7e3 MAINT: respond to code review
  • c20ac88 MAINT: use a try/finally to make the deadlock protection more robust
  • d494647 MAINT: fix indentation and clarify comment
  • 3f8fbd6 MAINT: go back to try/except
  • Additional commits viewable in compare view

Updates numcodecs from 0.13.1 to 0.15.1

Release notes

Sourced from numcodecs's releases.

v0.15.1

What's Changed

New Contributors

Full Changelog: zarr-developers/numcodecs@v0.15.0...v0.15.1

v0.15.0

What's Changed

New Contributors

Full Changelog: zarr-developers/numcodecs@v0.14.1...v0.15.0

v0.14.1

What's Changed

... (truncated)

Changelog

Sourced from numcodecs's changelog.

Release notes

.. # Unindent the section between releases in order # to document your changes. On releases it will be # re-indented so that it does not show up in the notes.

.. _unreleased:

Unreleased

.. _unreleased:

Unreleased

Enhancements


* Add support for the Linux AArch64 architecture, and bump the minimum
macOS deployment target for x86_64 to 10.13.
  By :user:`Agriya Khetarpal <agriyakhetarpal>`, :issue:`288`.

Improvements

  • Raise a custom UnknownCodecError when trying to retrieve an unavailable codec. By :user:Cas Wognum <cwognum>.
  • Add typesize argument to Blosc to allow for buffers that are passed to encode use that information. zarr v3 currently has its Blosc codec as bytes-to-bytes but does retain the size information so using it here allows for massive compression ratio gains. By :user:Ilan Gold <ilan-gold>

Fixes

* Remove redundant ``id`` from codec metadata serialization in Zarr3 codecs.
  By :user:`Norman Rzepka <normanrz>`, :issue:`685`

.. _release_0.15.0:


0.15.0


Breaking changes

  • All arguments to the PCodec constructor except for level are now keyword only, to support the updated API. By :user:Sam Levang <slevang>, :issue:623

... (truncated)

Commits

Updates setuptools-scm from 8.1.0 to 8.2.0

Changelog

Sourced from setuptools-scm's changelog.

v8.2.0

Added

  • fix #960: add a --force-write-version-files flag for the cli

Changed

  • fix #950: ensure to pass encodings to io usage
  • fix #957: add subprocess timeout control env var
  • add sp-repo-review pre-commit hook

Fixed

  • fix #1018: allow non-normalized versions for semver
  • fix #1103: respect GIT_CEILING_DIRECTORIES when trying to find git toplevels
  • fix #1081: add name normalized pipx entrypoint
  • fix #1080: clean pdm from PYTHONPATH to protect mercurial
Commits
  • e554978 complete changelog to reasonable accuracy for quick release
  • 260dcf0 chore: scriv collect
  • 836eb42 Merge pull request #1096 from DimitriPapadopoulos/ruff_0.9.1
  • 98b7078 Merge pull request #1106 from Ecordonnier/eco/git-ceiling-directories
  • 7d4e94c Merge pull request #1104 from jezdez/patch-1
  • 0b82e5d [pre-commit.ci] auto fixes from pre-commit.com hooks
  • 979d793 respect GIT_CEILING_DIRECTORIES
  • 68c6b20 Add missing code block end.
  • 9b6f031 Merge pull request #1102 from paugier/error-message-env-var
  • 2b0722f Mention SETUPTOOLS_SCM_PRETEND_VERSION_FOR in error message
  • Additional commits viewable in compare view

Updates lmdb from 1.5.1 to 1.6.2

Changelog

Sourced from lmdb's changelog.

2025-01-05 1.6.2

  • CI-only fix.

2025-01-05 1.6.1

  • CI-only fix.

2025-01-05 1.6.0

  • Support for Python 3.13. Contributed by Miro Hrončok and Adam Williamson.

  • CI: Publish 3.13 binaries and Linux aarch64 wheels for multiple versions.

Commits
  • 8c143c3 Bump version for release.
  • 9d4da39 Syntax error
  • b591f57 Bump version for release.
  • f30246e Don't publish to Test PyPI if a real release.
  • 8e995be Bump version for release.
  • bbc3ff7 Merge pull request #371 from jnwatson/3.13-support
  • 92c0d1a Add dependency from publish to build_aarch64
  • 75c01c2 Publish aarch64 wheels
  • 5aacb18 Fix aarch64 stomping on non aarch64 manylinux on upload
  • 9e7c6ab Change version to test publishing works
  • Additional commits viewable in compare view

Updates redis from 5.1.1 to 5.2.1

Release notes

Sourced from redis's releases.

5.2.1

Changes

🐛 Bug Fixes

  • Fixed unsecured tempfile.mktemp() command usage (#3446)
  • Fixed bug with SLOWLOG GET response parsing on Redis Software (#3441)
  • Fixed issue with invoking _close() on closed event loop (#3438)

🧰 Maintenance

  • Migrate test infrastructure to new custom docker images (#3415)
  • Fixed flacky test with HEXPIREAT command (#3437)

Contributors

We'd like to thank all the contributors who worked on this release!

@​IlianIliev @​uglide @​vladvildanov @​teodorfn @​akx

5.2.0

Changes

🚀 New Features

  • Extend AggregateRequest with scorer argument (#3409)

🧰 Maintenance

  • Pin pytest-profiling version due to the bug (#3417)

Contributors

We'd like to thank all the contributors who worked on this release!

@​uglide @​rbs333 @​vladvildanov @​dwdougherty

Commits

Updates pymongo from 4.10.1 to 4.11.2

Release notes

Sourced from pymongo's releases.

PyMongo 4.11.2

Community notes:

What's Changed

Full Changelog: mongodb/mongo-python-driver@4.11.1...4.11.2

PyMongo 4.11.1

Community notes: https://www.mongodb.com/community/forums/t/pymongo-4-11-1-released/312193

PyMongo 4.11.0

Community notes: https://www.mongodb.com/community/forums/t/pymongo-4-11-released/310976

Changelog

Sourced from pymongo's changelog.

Changes in Version 4.11.2 (YYYY/MM/DD)

Version 4.11.2 is a bug fix release.

  • Fixed a bug where :meth:~pymongo.database.Database.command would fail when attempting to run the bulkWrite command.

Issues Resolved ...............

See the PyMongo 4.11.2 release notes in JIRA_ for the list of resolved issues in this release.

.. _PyMongo 4.11.2 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=42506

Changes in Version 4.11.1 (2025/02/10)

  • Fixed support for prebuilt ppc64le and s390x wheels.

Changes in Version 4.11.0 (2025/01/28)

.. warning:: PyMongo 4.11 drops support for Python 3.8 and PyPy 3.9: Python 3.9+ or PyPy 3.10+ is now required. .. warning:: PyMongo 4.11 drops support for MongoDB 3.6. PyMongo now supports MongoDB 4.0+. Driver support for MongoDB 3.6 reached end of life in April 2024. .. warning:: Driver support for MongoDB 4.0 reaches end of life in April 2025. A future minor release of PyMongo will raise the minimum supported MongoDB Server version from 4.0 to 4.2. This is in accordance with MongoDB Software Lifecycle Schedules. Support for MongoDB Server 4.0 will be dropped in a future release! .. warning:: This version does not include wheels for ppc64le or s390x architectures, see PYTHON-5058_ for more information.

PyMongo 4.11 brings a number of changes including:

  • Dropped support for Python 3.8 and PyPy 3.9.
  • Dropped support for MongoDB 3.6.
  • Dropped support for the MONGODB-CR authenticate mechanism, which is no longer supported by MongoDB 4.0+.
  • pymongocrypt>=1.12 is now required for :ref:In-Use Encryption support.
  • Added support for free-threaded Python with the GIL disabled. For more information see: Free-threaded CPython <https://docs.python.org/3.13/whatsnew/3.13.html#whatsnew313-free-threaded-cpython>. We do not yet support free-threaded Python on Windows (PYTHON-5027) or with In-Use Encryption (PYTHON-5024_).
  • :attr:~pymongo.asynchronous.mongo_client.AsyncMongoClient.address and :attr:~pymongo.mongo_client.MongoClient.address now correctly block when called on unconnected clients until either connection succeeds or a server selection timeout error is raised.
  • Added :func:repr support to :class:pymongo.operations.IndexModel.
  • Added :func:repr support to :class:pymongo.operations.SearchIndexModel.
  • Added sort parameter to :meth:~pymongo.collection.Collection.update_one, :meth:~pymongo.collection.Collection.replace_one, :class:~pymongo.operations.UpdateOne, and :class:~pymongo.operations.UpdateMany,
  • :meth:~pymongo.mongo_client.MongoClient.bulk_write and

... (truncated)

Commits

Updates pytest-cov from 5.0.0 to 6.0.0

Changelog

Sourced from pytest-cov's changelog.

6.0.0 (2024-10-29)

  • Updated various documentation inaccuracies, especially on subprocess handling.
  • Changed fail under checks to use the precision set in the coverage configuration. Now it will perform the check just like coverage report would.
  • Added a --cov-precision cli option that can override the value set in your coverage configuration.
  • Dropped support for now EOL Python 3.8.
Commits
  • 9540437 Bump version: 5.0.0 → 6.0.0
  • 9f81754 Further trim down envs and drop Python 3.8.
  • b12b5ec Update conf.
  • 23f4b27 Update changelog.
  • 291a04f Bump test deps and trim config.
  • 08f1101 Add --cov-precision option. Close #655.
  • 76fe2a7 Move the warnings/errors in a place that doesn't import anything.
  • a9ea7b7 Implement error/warning for the bad dynamic_context being set in config.
  • c299e01 Add explicit suffixing to make it easier to see the identify the sources/usag...
  • c87e546 Add reproducer for weird xdist dynamic_context interaction. Ref #604.
  • Additional commits viewable in compare view

Updates pytest-doctestplus from 1.3.0 to 1.4.0

Release notes

Sourced from pytest-doctestplus's releases.

v1.4.0

What's Changed

New Contributors

Full Changelog: scientific-python/pytest-doctestplus@v1.3.0...v1.4.0

Changelog

Sourced from pytest-doctestplus's changelog.

1.4.0 (2025-01-24)

  • Fixing compatibility with pytest-asyncio. #278

  • Adding new directive doctest-requires-all to conditionally skip all doctests in narrative documentations based on availability of dependencies. #280

  • Adding new directive doctest-remote-data-all to conditionally skip all doctests in narrative documentations based on availability of remote-data. #281

  • Versions of Python <3.9 are no longer supported. #274

Commits
  • c1f124c Finalizing changelog for v1.4.0
  • 5e1a479 Merge pull request #281 from bsipocz/doctest-remote-data-all
  • a7213fb Adding whitespaces
  • 082ef33 TST: adding tests for doctest-remote-data-all
  • fe2593b DOC: adding changelog
  • 4e647a2 ENH: adding doctest-remote-data-all directive
  • d620c96 Merge pull request #280 from bsipocz/doctest-requires-all
  • 74cebb8 Cleanup from review
  • 44407a6 DOC: adding changelog
  • 0ac57e8 DOC: adding doctest-requires-all to the docs
  • Additional commits viewable in compare view

Updates h5py from 3.12.1 to 3.13.0

Commits
  • c96b93d Merge pull request #2559 from h5py/changelog-3.13
  • 04daabc Add docstring for SpaceId.select_shape_same
  • 0588148 Full import path to low-level method
  • 584b591 Add release notes for 3.13
  • a04f03c Version number -> 3.13
  • f416f89 Merge pull request #2517 from takluyver/in-memory
  • 7bc2c19 Use a different make_fapl() parameter to test File.in_memory()
  • 3a7bd67 Add news entry for File.in_memory()
  • 261f609 Fix passing make_fcpl() keyword arguments from File.in_memory()
  • c8a141b Fix default block size in docs
  • Additional commits viewable in compare view

Updates pytest from 8.3.3 to 8.3.5

Release notes

Sourced from pytest's releases.

8.3.5

pytest 8.3.5 (2025-03-02)

Bug fixes

  • #11777: Fixed issue where sequences were still being shortened even with -vv verbosity.
  • #12888: Fixed broken input when using Python 3.13+ and a libedit build of Python, such as on macOS or with uv-managed Python binaries from the python-build-standalone project. This could manifest e.g. by a broken prompt when using Pdb, or seeing empty inputs with manual usage of input() and suspended capturing.
  • #13026: Fixed AttributeError{.interpreted-text role="class"} crash when using --import-mode=importlib when top-level directory same name as another module of the standard library.
  • #13053: Fixed a regression in pytest 8.3.4 where, when using --import-mode=importlib, a directory containing py file with the same name would cause an ImportError
  • #13083: Fixed issue where pytest could crash if one of the collected directories got removed during collection.

Improved documentation

  • #12842: Added dedicated page about using types with pytest.

    See types{.interpreted-text role="ref"} for detailed usage.

Contributor-facing changes

  • #13112: Fixed selftest failures in test_terminal.py with Pygments >= 2.19.0
  • #13256: Support for Towncrier versions released in 2024 has been re-enabled when building Sphinx docs -- by webknjaz{.interpreted-text role="user"}.

8.3.4

pytest 8.3.4 (2024-12-01)

Bug fixes

  • #12592: Fixed KeyError{.interpreted-text role="class"} crash when using --import-mode=importlib in a directory layout where a directory contains a child directory with the same name.

  • #12818: Assertion rewriting now preserves the source ranges of the original instructions, making it play well with tools that deal with the AST, like executing.

  • #12849: ANSI escape codes for colored output now handled correctly in pytest.fail{.interpreted-text role="func"} with [pytrace=False]{.title-ref}.

  • #9353: pytest.approx{.interpreted-text role="func"} now uses strict equality when given booleans.

Improved documentation

  • #10558: Fix ambiguous docstring of pytest.Config.getoption{.interpreted-text role="func"}.

  • #10829: Improve documentation on the current handling of the --basetemp option and its lack of retention functionality (temporary directory location and retention{.interpreted-text role="ref"}).

... (truncated)

Commits

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@dependabot
Bump the requirements group across 1 directory with 10 updates
c97f380 
Bumps the requirements group with 10 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [numpy](https://github.com/numpy/numpy) | `2.1.2` | `2.2.3` |
| [numcodecs](https://github.com/zarr-developers/numcodecs) | `0.13.1` | `0.15.1` |
| [setuptools-scm](https://github.com/pypa/setuptools-scm) | `8.1.0` | `8.2.0` |
| [lmdb](https://github.com/jnwatson/py-lmdb) | `1.5.1` | `1.6.2` |
| [redis](https://github.com/redis/redis-py) | `5.1.1` | `5.2.1` |
| [pymongo](https://github.com/mongodb/mongo-python-driver) | `4.10.1` | `4.11.2` |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `5.0.0` | `6.0.0` |
| [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) | `1.3.0` | `1.4.0` |
| [h5py](https://github.com/h5py/h5py) | `3.12.1` | `3.13.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.3` | `8.3.5` |



Updates `numpy` from 2.1.2 to 2.2.3
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.2...v2.2.3)

Updates `numcodecs` from 0.13.1 to 0.15.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.1...v0.15.1)

Updates `setuptools-scm` from 8.1.0 to 8.2.0
- [Release notes](https://github.com/pypa/setuptools-scm/releases)
- [Changelog](https://github.com/pypa/setuptools-scm/blob/main/CHANGELOG.md)
- [Commits](pypa/setuptools-scm@v8.1.0...v8.2.0)

Updates `lmdb` from 1.5.1 to 1.6.2
- [Changelog](https://github.com/jnwatson/py-lmdb/blob/master/ChangeLog)
- [Commits](jnwatson/py-lmdb@py-lmdb_1.5.1...py-lmdb_1.6.2)

Updates `redis` from 5.1.1 to 5.2.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.1...v5.2.1)

Updates `pymongo` from 4.10.1 to 4.11.2
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.1...4.11.2)

Updates `pytest-cov` from 5.0.0 to 6.0.0
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v5.0.0...v6.0.0)

Updates `pytest-doctestplus` from 1.3.0 to 1.4.0
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.3.0...v1.4.0)

Updates `h5py` from 3.12.1 to 3.13.0
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.12.1...3.13.0)

Updates `pytest` from 8.3.3 to 8.3.5
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.3...8.3.5)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: numcodecs
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: setuptools-scm
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: lmdb
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: redis
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: pymongo
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: pytest-cov
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: requirements
- dependency-name: pytest-doctestplus
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: h5py
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Mar 4, 2025
@dstansby dstansby merged commit fe91ba7 into support/v2 Mar 4, 2025
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@dstansby dstansby deleted the dependabot/pip/support/v2/requirements-38f9409136 branch March 4, 2025 14:41
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