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Add to_matrix_cl() vector<var> and minor OpenCL fixes #2226

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merged 9 commits into from
Dec 4, 2020
Merged

Add to_matrix_cl() vector<var> and minor OpenCL fixes #2226

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fff7787
fix rows header
rok-cesnovar Dec 2, 2020
4cf0563
fix opencl main headers
rok-cesnovar Dec 2, 2020
2add4a8
add to_matrix_cl for std::vector<var>
rok-cesnovar Dec 2, 2020
3ae5aa1
[Jenkins] auto-formatting by clang-format version 6.0.0-1ubuntu2~16.0…
stan-buildbot Dec 2, 2020
887e585
Merge branch 'develop' into opencl_fixes
rok-cesnovar Dec 4, 2020
741e0c7
fix to_matrix_cl
rok-cesnovar Dec 4, 2020
6aaadc0
add ifdef
rok-cesnovar Dec 4, 2020
77a1e8c
Merge commit '3752d2a212c6205140fba0effacdd123d11b245f' into HEAD
yashikno Dec 4, 2020
cd23348
[Jenkins] auto-formatting by clang-format version 6.0.0-1ubuntu2~16.0…
stan-buildbot Dec 4, 2020
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4 changes: 2 additions & 2 deletions stan/math/opencl/opencl.hpp → stan/math/opencl/prim.hpp
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@@ -1,5 +1,5 @@
#ifndef STAN_MATH_OPENCL_OPENCL
#define STAN_MATH_OPENCL_OPENCL
#ifndef STAN_MATH_OPENCL_PRIM_HPP
#define STAN_MATH_OPENCL_PRIM_HPP
#ifdef STAN_OPENCL

/**
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4 changes: 2 additions & 2 deletions stan/math/opencl/prim/rows.hpp
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#ifndef STAN_MATH_OPENCL_PRIM_COLS_HPP
#define STAN_MATH_OPENCL_PRIM_COLS_HPP
#ifndef STAN_MATH_OPENCL_PRIM_ROWS_HPP
#define STAN_MATH_OPENCL_PRIM_ROWS_HPP
#ifdef STAN_OPENCL

#include <stan/math/opencl/matrix_cl.hpp>
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6 changes: 3 additions & 3 deletions stan/math/opencl/rev/opencl.hpp → stan/math/opencl/rev.hpp
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#ifndef STAN_MATH_OPENCL_OPENCL_REV
#define STAN_MATH_OPENCL_OPENCL_REV
#ifndef STAN_MATH_OPENCL_REV_HPP
#define STAN_MATH_OPENCL_REV_HPP
#ifdef STAN_OPENCL

#include <stan/math/opencl/rev/size.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <stan/math/opencl/rev/arena_matrix_cl.hpp>
#include <stan/math/opencl/rev/arena_type.hpp>
#include <stan/math/opencl/rev/cholesky_decompose.hpp>
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16 changes: 16 additions & 0 deletions stan/math/opencl/rev/copy.hpp
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Expand Up @@ -53,6 +53,22 @@ inline var_value<matrix_cl<value_type_t<T>>> to_matrix_cl(
a.vi_->adj_);
}

/** \ingroup opencl
* Copies the source std::vector of vars to a destination var that has
* data stored on the OpenCL device.
*
* @tparam T type of the std::vector
* @param a source Eigen matrix
* @return var with a copy of the data on the OpenCL device
*/
template <typename T, require_stan_scalar_t<T>* = nullptr>
inline var_value<matrix_cl<value_type_t<T>>> to_matrix_cl(
std::vector<var_value<T>>& a) {
return to_matrix_cl(
Eigen::Map<Eigen::Matrix<var_value<T>, Eigen::Dynamic, 1>>(a.data(),
a.size()));
}

namespace internal {
template <typename T, int Rows, int Cols,
require_all_kernel_expressions_t<T>* = nullptr>
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4 changes: 4 additions & 0 deletions stan/math/prim.hpp
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Expand Up @@ -11,4 +11,8 @@
#include <stan/math/prim/functor.hpp>
#include <stan/math/prim/prob.hpp>

#ifdef STAN_OPENCL
#include <stan/math/opencl/prim.hpp>
#endif

#endif
2 changes: 1 addition & 1 deletion stan/math/prim/fun/cholesky_decompose.hpp
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Expand Up @@ -5,7 +5,7 @@
#include <stan/math/prim/err.hpp>
#include <stan/math/prim/fun/Eigen.hpp>
#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#endif

#include <cmath>
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2 changes: 1 addition & 1 deletion stan/math/prim/fun/gp_exp_quad_cov.hpp
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Expand Up @@ -9,7 +9,7 @@
#include <stan/math/prim/fun/exp.hpp>
#include <stan/math/prim/fun/square.hpp>
#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#endif

#include <cmath>
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2 changes: 1 addition & 1 deletion stan/math/prim/fun/mdivide_left_tri.hpp
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Expand Up @@ -6,7 +6,7 @@
#include <stan/math/prim/fun/Eigen.hpp>
#include <stan/math/prim/fun/to_ref.hpp>
#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#endif

namespace stan {
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2 changes: 1 addition & 1 deletion stan/math/prim/fun/mdivide_right_tri.hpp
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Expand Up @@ -6,7 +6,7 @@
#include <stan/math/prim/fun/Eigen.hpp>
#include <stan/math/prim/fun/to_ref.hpp>
#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#endif

namespace stan {
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2 changes: 1 addition & 1 deletion stan/math/prim/fun/multiply.hpp
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#include <stan/math/prim/fun/Eigen.hpp>
#include <stan/math/prim/fun/dot_product.hpp>
#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#endif
#include <type_traits>

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2 changes: 2 additions & 0 deletions stan/math/rev.hpp
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Expand Up @@ -3,6 +3,8 @@

#include <stan/math/prim/fun/Eigen.hpp>

#include <stan/math/opencl/rev.hpp>

#include <stan/math/rev/core.hpp>
#include <stan/math/rev/meta.hpp>

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2 changes: 1 addition & 1 deletion stan/math/rev/fun/cholesky_decompose.hpp
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Expand Up @@ -14,7 +14,7 @@
#include <stan/math/prim/err/check_symmetric.hpp>

#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#endif

#include <algorithm>
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2 changes: 1 addition & 1 deletion stan/math/rev/fun/mdivide_left_tri.hpp
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Expand Up @@ -8,7 +8,7 @@
#include <stan/math/prim/fun/Eigen.hpp>
#include <stan/math/prim/fun/typedefs.hpp>
#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#endif

namespace stan {
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/assign_event_test.cpp
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#ifdef STAN_OPENCL

#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <stan/math/opencl/kernel_cl.hpp>
#include <gtest/gtest.h>

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2 changes: 1 addition & 1 deletion test/unit/math/opencl/async_test.cpp
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#ifdef STAN_OPENCL

#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/util.hpp>
#include <gtest/gtest.h>

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2 changes: 1 addition & 1 deletion test/unit/math/opencl/check_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <gtest/gtest.h>
#include <limits>

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2 changes: 1 addition & 1 deletion test/unit/math/opencl/check_vector_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <gtest/gtest.h>
#include <limits>
#include <vector>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/cholesky_decompose_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/util.hpp>
#include <gtest/gtest.h>
#include <algorithm>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/is_matrix_cl_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <gtest/gtest.h>
#include <type_traits>

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2 changes: 1 addition & 1 deletion test/unit/math/opencl/kernel_cl_test.cpp
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#ifdef STAN_OPENCL

#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/util.hpp>
#include <gtest/gtest.h>
#include <algorithm>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/opencl_context_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/util.hpp>
#include <gtest/gtest.h>
#include <vector>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/add_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/util.hpp>
#include <gtest/gtest.h>
#include <algorithm>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/cholesky_decompose_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/util.hpp>
#include <gtest/gtest.h>
#include <algorithm>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/crossprod_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <stan/math/prim/fun/crossprod.hpp>
#include <gtest/gtest.h>

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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/divide_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/util.hpp>
#include <gtest/gtest.h>
#include <algorithm>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/inv_logit_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <stan/math/prim/fun/inv_logit.hpp>
#include <stan/math/prim/fun/constants.hpp>
#include <stan/math/prim/fun/typedefs.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/inv_square_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <stan/math/prim/fun/inv_square.hpp>
#include <stan/math/prim/fun/constants.hpp>
#include <stan/math/prim/fun/typedefs.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/log1m_inv_logit_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <stan/math/prim/fun/log1m_inv_logit.hpp>
#include <stan/math/prim/fun/constants.hpp>
#include <stan/math/prim/fun/typedefs.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/logit_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <stan/math/prim/fun/logit.hpp>
#include <stan/math/prim/fun/constants.hpp>
#include <stan/math/prim/fun/typedefs.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/mdivide_left_tri_low_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/math/expect_near_rel.hpp>
#include <test/unit/util.hpp>
#include <boost/random/mersenne_twister.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/mdivide_right_tri_low_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/math/expect_near_rel.hpp>
#include <test/unit/util.hpp>
#include <boost/random/mersenne_twister.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/multiply_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/util.hpp>
#include <gtest/gtest.h>
#include <algorithm>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/sign_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <test/unit/util.hpp>

TEST(MathMatrixCL, sign_test) {
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/subtract_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <gtest/gtest.h>
#include <algorithm>

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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/tcrossprod_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <stan/math/prim/fun/tcrossprod.hpp>
#include <gtest/gtest.h>

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2 changes: 1 addition & 1 deletion test/unit/math/opencl/prim/transpose_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/prim.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <gtest/gtest.h>
#include <algorithm>

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2 changes: 1 addition & 1 deletion test/unit/math/opencl/require_generics_test.cpp
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#ifdef STAN_OPENCL

#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <stan/math/prim/meta.hpp>
#include <gtest/gtest.h>
#include <type_traits>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/rev/bernoulli_logit_glm_lpmf_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math.hpp>
#include <stan/math/opencl/rev/opencl.hpp>
#include <stan/math/opencl/rev.hpp>
#include <gtest/gtest.h>
#include <test/unit/math/opencl/util.hpp>
#include <vector>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/rev/bernoulli_logit_lpmf_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/rev/opencl.hpp>
#include <stan/math/opencl/rev.hpp>
#include <stan/math.hpp>
#include <gtest/gtest.h>
#include <test/unit/math/opencl/util.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/rev/bernoulli_lpmf_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/rev/opencl.hpp>
#include <stan/math/opencl/rev.hpp>
#include <stan/math.hpp>
#include <gtest/gtest.h>
#include <test/unit/math/opencl/util.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/rev/beta_lpdf_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/rev/opencl.hpp>
#include <stan/math/opencl/rev.hpp>
#include <stan/math.hpp>
#include <gtest/gtest.h>
#include <test/unit/math/opencl/util.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/rev/beta_proportion_lpdf_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/rev/opencl.hpp>
#include <stan/math/opencl/rev.hpp>
#include <stan/math.hpp>
#include <gtest/gtest.h>
#include <test/unit/math/opencl/util.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/rev/categorical_logit_glm_lpmf_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math.hpp>
#include <stan/math/opencl/opencl.hpp>
#include <stan/math/opencl/prim.hpp>
#include <gtest/gtest.h>
#include <test/unit/math/opencl/util.hpp>
#include <vector>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/rev/cauchy_lpdf_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/rev/opencl.hpp>
#include <stan/math/opencl/rev.hpp>
#include <stan/math.hpp>
#include <gtest/gtest.h>
#include <test/unit/math/opencl/util.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/rev/chi_square_lpdf_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/rev/opencl.hpp>
#include <stan/math/opencl/rev.hpp>
#include <stan/math.hpp>
#include <gtest/gtest.h>
#include <test/unit/math/opencl/util.hpp>
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2 changes: 1 addition & 1 deletion test/unit/math/opencl/rev/cholesky_decompose_test.cpp
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#ifdef STAN_OPENCL
#include <stan/math/opencl/rev/opencl.hpp>
#include <stan/math/opencl/rev.hpp>
#include <stan/math.hpp>
#include <gtest/gtest.h>
#include <test/unit/math/opencl/util.hpp>
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