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SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 1k 183

  2. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 80 37

  3. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 64 28

  4. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 58 17

  5. first-steps-with-R-training first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    R 45 12

  6. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 40 15

Repositories

Showing 10 of 127 repositories
  • sparql-editor Public

    💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

    sib-swiss/sparql-editor’s past year of commit activity
    TypeScript 11 MIT 0 9 0 Updated Mar 10, 2025
  • multiomics-data-analysis-and-integration-training Public
    sib-swiss/multiomics-data-analysis-and-integration-training’s past year of commit activity
    HTML 21 7 1 0 Updated Mar 10, 2025
  • single-cell-r-training Public Forked from sib-swiss/single-cell-training

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    sib-swiss/single-cell-r-training’s past year of commit activity
    R 1 CC-BY-4.0 37 0 0 Updated Mar 10, 2025
  • single-cell-python-training Public
    sib-swiss/single-cell-python-training’s past year of commit activity
    HTML 3 CC-BY-4.0 0 0 0 Updated Mar 9, 2025
  • spatial-transcriptomics-training Public
    sib-swiss/spatial-transcriptomics-training’s past year of commit activity
    R 2 CC-BY-4.0 1 1 0 Updated Mar 9, 2025
  • cancer-variants-training Public
    sib-swiss/cancer-variants-training’s past year of commit activity
    Lua 4 CC-BY-4.0 2 0 0 Updated Mar 9, 2025
  • sparql-examples-utils Public Forked from sib-swiss/sparql-examples

    A tool to maintain and test your SPARQL examples

    sib-swiss/sparql-examples-utils’s past year of commit activity
    Java 5 16 14 1 Updated Mar 7, 2025
  • kgsteward Public

    Knowledge Graph Steward - Command line tool to help manage RDF store

    sib-swiss/kgsteward’s past year of commit activity
    Python 6 GPL-3.0 2 0 0 Updated Mar 7, 2025
  • CAS-UNIL-intro-to-git Public

    Introduction to Git - UNIL CAS in data stewardship

    sib-swiss/CAS-UNIL-intro-to-git’s past year of commit activity
    0 0 0 0 Updated Mar 7, 2025
  • sparql-examples Public

    A set of SPARQL examples that are used in different SIB resources

    sib-swiss/sparql-examples’s past year of commit activity
    HTML 14 16 6 (1 issue needs help) 3 Updated Mar 6, 2025
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