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* Links to further examples corrected As I came across the broken links in the online documentation on readthedocs I thought I just propose the corrected links. The broken link to the User interface was fixed as well. * Links to Scheme Tutorial corrected Links from "Scheme_Tutorial.md" changed to "Scheme_Tutorials/Basics.md"
* Fixes for Jupyter * Fix regex
* trying mkdocs stuff on master branch as readthedocs seems to have trouble with other branches * synced with stevengj/master * sync with stevenj master * updates * rebased and updated .travis.yml with a 4-branch build matrix * updates * updates * solely for the sake of travis debugging, remove all tests except aniso_disp from the core-library test suite * updates to .travis.yml build matrix; temporary reduce TESTS in tests/Makefile.am and python/Makefile.am to minimal test suite just to get travis build working * updates to .travis.yml * updates to .travis.yml * updates to .travis.yml * rebased and updated .travis.yml with a 4-branch build matrix * updates * updates * solely for the sake of travis debugging, remove all tests except aniso_disp from the core-library test suite * updates to .travis.yml build matrix; temporary reduce TESTS in tests/Makefile.am and python/Makefile.am to minimal test suite just to get travis build working * updates to .travis.yml * updates to .travis.yml * updates to .travis.yml * updates to .travis.yml * updates * updates
…t: after it has deleted the polarization state data
* Add material-dispersion.py example and test * Includes Susceptibility fixes * Temp workaround for py2 double free * Add material-dispersion.py example and test * Includes Susceptibility fixes * Temp workaround for py2 double free * WIP * Delete extra comment * Remove __swig_destroy__ calls
…other minor fixes (#110) * Python tutorial for holey waveguide and other minor fixes * minor tweaks
* trying mkdocs stuff on master branch as readthedocs seems to have trouble with other branches * synced with stevengj/master * sync with stevenj master * updates * remove unnecessary libhdf5-serial-dev package from .travis build; restore in python/Makefile.am to ensure python tests are executed under mpirun when building --with-mpi * restored libhdf5-dev to package prerequisites (still omitting libhdf5-serial-dev) * updates * updates
* Add ring-cyl.py example * Add working test for ring-cyl.py example * Fix for py3 jupyter * Add .py extension to __main__ * Check for cylindrical user volume Also set default geometry and sources to []
…ation examples to documentation and other minor fixes (#111) * Python tutorial for material dispersion and other minor fixes * minor tweaks and fixes * more minor tweaks and fixes * some fixes and 3 additional Scheme example files * add Third Harmonic Generation example with more fixes and tweaks * final set of tweaks and fixes * tiny fix
…documentation and other fixes (#117) * add Python ring resonator in cylindrical coordinates tutorial to documentation and other fixes * restore meep-pkgconfig.in * minor tweaks
* fixes for new material_type in libctlgeom 4 * update python usage of material_type
* set_epsilon wrapper * Return Vector3 from vec2py instead of tuple
* Add working antenna-radiation.py * Add test for radiation-antenna.py * Add cavity-farfield.py * Working cavity-farfield.py example
* Print complex numbers in scheme format * Don't mutate data * Don't print double minus sign
* trying mkdocs stuff on master branch as readthedocs seems to have trouble with other branches * synced with stevengj/master * sync with stevenj master * updates * revised calculation of array_slice strides and offsets * revised calculation of sco=slice chunk offset in array-slice.cpp
* add near-to-far field transformation tutorial to documentation and other minor fixes * more fixes and tweaks
* f * Add cavity_arrayslice test to Makefile * Improve readability of if condition in change_k_point * Return ndarray instead of storing shape * Adjust array tests * Fix get_array_slice typemaps * Allow user arrays * Allow complex arrays * Py2 compatability * Default complex in get_array * Account for cylindrical Volume
* Add metal-cavity-ldos.py example * Add metal-cavity-ldos.py and parallel-wvgs-force.py * Add initial wvg-src.py * Working wvg-src.py and test * Add pw-source.py example * Working pw-source.py and test
…r documentation (#133) * local density of states (LDOS) Python tutorial for documentation * add optical forces Python tutorial to documentation and minor fixes * more minor fixes and tweaks
* Only print on master node in MPI mode * Remove non-standard mpi flags * Fix hanging test * Fix failing physical.py test * Send non-master MPI output to os.devnull * Don't close os.devnull * Remove future import
* Add metal-cavity-ldos.py example * Add metal-cavity-ldos.py and parallel-wvgs-force.py * Starting field functions * Field function progress * Field functions working * Test output_field_function * Show test logs on travis while still taking advantage of 'set -e' * Fix python test-suite.log path * fix test suite paths * simplify
* Add diamond example and test * Add hole-slab examples and test * Add honey_rods example and test * Replace np.testing.assert_allclose for h5 comparisons * Add line_defect example and test. * Add sq_rods example and test * Run sq_rod example in main
* Fix mpb in installation package * Force remove on cleanup
* updates to docs * more tweaks
…lerance (#217) * Add remaining MPB examples and tests * Starting subpixel averaging * Subpixel averaging working * Lower MPB test accuracy * Update test data to use subpixel averaging * Always use Kottke method
* Add public set_materials method * Add sanity test for set_materials * Add documentation for set_materials * Remove any old susceptibilities before setting them * Improve test_set_materials * Fields needs to know if chunks are shared
* Add first_brillouin_zone and test * Add missing functionality * Add missing functionality
… to call get_eigenmode_coefficients from python (#227) * removed k_func argument to get_eigenmode_coefficients, added typemaps to allow get_eigenmode_coefficients to be callable from python * updates
* Getting eigenvectors * get_eigenvectors working * set_eigenvectors working * load and save eigenvectors working * Call fix_hfield_phase in get_eigenvectors test
* Pass solve_cw arguments
* add frequency-domain solver tutorial and other fixes to docs * remove figures * update configure.ac * update scheme/Makefile.am * tweaks * more tweaks
…r all DFT structures (#226) * rehauled flux/mode overlap calculation, added HDF5 output routines for all types of DFT structures * fixed bugs in output_dft routines; added libmeepgeom/dft-fields.cpp code to test new dft_fields structures and new output_dft routines * updates to libmeepgeom/dft-fields.cpp test * removed multiple-resolution runs from libmeepgeom/dft-fields and added this test to unit-test suite * updated typemap suite for add_dft_fields; removed old dummy interface to C++ routine that had been used with previous typemap suite * fixed failing test in libmeepgeom/dft-fields
* Starting data-analysis * Progress on mpb-data * mpb_data port complete * mpb-data file i/o working * Switch MPBData to array i/o instead of file i/o * Fix for python 2 * Write map_data in C * data analysis tests working * Fix return shape of get_*field functions. * Remove transpose flag * Fix for py2 * handle_cvector working
…her doc updates (#242) * updates to docs * more tweaks * minor fixes
* Add epsilon_input_file support and test * Make all_freqs an ndarray
* Support for with-hermitian-epsilon * Fix typo
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