Releases: pyranges/pyranges
Releases · pyranges/pyranges
0.0.132
Tagging a "stable" v0 in view of the transition to v1
v0 tagged releases will have long-term documentation in readthedocs
What's Changed
- Spliced subseq2 by @endrebak in #232
- 0.0.112 by @endrebak in #226
- Add subsequence by @marco-mariotti in #240
- Fix gff3 writer by @endrebak in #241
- Changes to make flake8 pass by @endrebak in #242
- Update ghwf by @endrebak in #243
- Fix one-off error for GTF Start coordinates in read_gtf_restricted (read_gtf(full=False)) by @SamBryce-Smith in #260
- Trying to autogenerate book with github actions. by @endrebak in #247
- Allow reading empty attribute GTF by @endrebak in #269
- A small update to remove pd.append() warnings by @aallahyar in #279
- Fixed the replace parameter. by @FabrizioG202 in #270
- added step to reorder bed columns based on order in PyRanges object before writing by @fairliereese in #275
- Linked intervals by @marco-mariotti in #266
- Fix UnboundLocalError for 'null' variable by @mkanai in #264
- Docstring update by @marco-mariotti in #290
- Bug fix on subsequence and spliced_subsequence by @marco-mariotti in #294
- 0.0.121 by @endrebak in #300
- Improve genome bounds by @marco-mariotti in #295
- fixed empty attribute bug in read_gtf when duplicate_attr=True by @fairliereese in #297
- Fix FutureWarning by @y9c in #284
- book: index and tutorial by @marco-mariotti in #318
- Preserve order aallahyar by @endrebak in #319
- hi by @endrebak in #328
- ho by @endrebak in #329
- hi by @endrebak in #330
- hia by @endrebak in #331
- hi by @endrebak in #333
- Update run_hypothesis_tests.yml by @endrebak in #334
- Update run_hypothesis_tests.yml by @endrebak in #335
- Add property tests by @endrebak in #336
- Require fewer property tests on github actions by @endrebak in #337
- Fix tostring2 by @endrebak in #339
- 0.0.128 Fix left join category error #342 by @endrebak in #343
- 342 2 by @endrebak in #344
- New documentation by @marco-mariotti in #347
- RTD bugfix by @marco-mariotti in #350
- Bump urllib3 from 2.0.5 to 2.0.6 in /docs by @dependabot in #352
- Option to automatically rename reserved GTF columns in
read_gtfby @fairliereese in #354 - Minor doc edits by @marco-mariotti in #358
- COC by @endrebak in #368
- Del by @endrebak in #369
- Open file fix by @endrebak in #379
New Contributors
- @SamBryce-Smith made their first contribution in #260
- @aallahyar made their first contribution in #279
- @FabrizioG202 made their first contribution in #270
- @fairliereese made their first contribution in #275
- @mkanai made their first contribution in #264
- @y9c made their first contribution in #284
- @dependabot made their first contribution in #352
Full Changelog: 0.0.111...v0
Contributors
mkanai, y9c, and 7 other contributors
Assets 2
0.0.111
Set min version pyranges (#225) Co-authored-by: endre bakken stovner <[email protected]>
0.0.85
0.0.79
0.0.58
- fix merge print functions
- make pickleable
- add iter as alias for itergrs in pr. namespace
- gr.length() shows nucleotide length (sum of all interval lengths)
- gr.lengths() takes as_dict=False flag to return as vector
- fix slack in join: added columns when joining with itself
- fix print for unstranded pyranges: printed tail and head of first chromosome
0.0.57
0.0.57 (10.10.19): add overlap-flag to tile + bugfixes (#34) * 0.0.57 (10.10.19): add overlap-flag to tile + bugfixes - add overlap-flag to tile - add chain to print-method - bugfix: printing stranded pyranges sorted output even though sort was false - bugfix: wrong number hidden cols on very small terminal widths - bugfix: unstrand did not change underlying dict to chromosomes only - show number of hidden columns in header - tests: mismatches in strand between dict and dataframes * Fix bug in tile overlap * Fix tests * Fix tile overlap * df/as_df returns non-duplicated index