Unknown error when attempting to run pizzly

[MichaelPisano]

Hello,

I've been trying to get pizzly to work with one our datasets and have run into some problems. I have been able to successfully complete each of the kallisto steps but when I attempt to run pizzly I get the following error:

terminating with uncaught exception of type seqan::UnknownExtensionError: Unknown file extension of Mus_musculus.GRCm38.cds.all.fa2.gz: unspecified iostream_category error

It seems to be some sort of problem loading the FASTA file but I'm unsure as to why. Do you have an potential solutions?

Thank you,

Michael

[pmelsted]

I think seqan, which handles fasta parsing is very specific about file endings, try renaming the file to end with fa.gz, that should "fix" it for now