crisprVerse

All

24 repositories

rnaiDesign
Public
HTML
•
MIT License
•0•1•0•0•Updated Mar 6, 2025Mar 6, 2025
rnaiDesignData
Public
R
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MIT License
•0•1•0•0•Updated Mar 6, 2025Mar 6, 2025
crisprDesign
Public
Comprehensive design of CRISPR gRNAs for nucleases and base editors
bioconductor crispr crispr-target crispr-cas9 grna grna-sequence bioconductor-package sgrna crispr-design sgrna-design
R
•
MIT License
•6•22•9•0•Updated Mar 5, 2025Mar 5, 2025
crisprConfig
Public
Helper package for convenient crisprVerse configurations
R
•0•0•0•0•Updated Feb 27, 2025Feb 27, 2025
crisprIndices
Public
Mock repository to store indices needed for the crisprVerse
R
•0•0•0•0•Updated Feb 27, 2025Feb 27, 2025
crisprBlast
Public
R
•
MIT License
•0•0•0•0•Updated Feb 14, 2025Feb 14, 2025
Tutorials
Public
Tutorials for the crisprVerse
crispr-analysis crispr genome-analysis crispr-target bowtie grna grna-sequence cas12a crispr-design crispr-cas
TeX
•
MIT License
•0•10•2•0•Updated Feb 10, 2025Feb 10, 2025
screenCounter
Public
Get barcode counts from functional genomics screens
C++
•
MIT License
•1•3•1•0•Updated Dec 12, 2024Dec 12, 2024
crisprDesignData
Public
Useful human and mouse data for the crisprVerse ecosystem
bioconductor crispr-analysis crispr crispr-target crispr-cas9 grna grna-sequence bioconductor-package sgrna crispr-design
R
•
MIT License
•0•5•0•0•Updated Oct 23, 2024Oct 23, 2024
crisprDesignAux
Public
Auxiliary functions to the crisprDesign package
R
•
MIT License
•0•0•0•0•Updated Oct 23, 2024Oct 23, 2024
crisprScoreData
Public
Pre-trained models for the crisprScore package
bioconductor crispr-analysis crispr crispr-target scoring-models crispr-cas9 grna grna-sequence bioconductor-package sgrna
R
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Other
•0•2•0•0•Updated Oct 23, 2024Oct 23, 2024
crisprBwa
Public
BWA-based alignment of CRISPR gRNA spacer sequences
bioconductor crispr-analysis crispr bwa crispr-target aligner crispr-cas9 grna grna-sequence bioconductor-package
R
•
MIT License
•0•1•0•0•Updated Oct 23, 2024Oct 23, 2024
crisprBowtie
Public
Bowtie-based alignment of CRISPR gRNA spacer sequences
bioconductor crispr-analysis crispr crispr-target bowtie aligner crispr-cas9 grna grna-sequence bioconductor-package
R
•
MIT License
•0•3•0•0•Updated Oct 23, 2024Oct 23, 2024
crisprScore
Public
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
genomics bioconductor crispr crispr-target crispr-cas9 grna grna-sequence bioconductor-package scoring-algorithm sgrna
Python
•
MIT License
•3•16•6•0•Updated Oct 4, 2024Oct 4, 2024
.github
Public
MIT License
•0•0•0•0•Updated Aug 6, 2024Aug 6, 2024
crisprBase
Public
Base functions and classes for CRISPR gRNA design
bioconductor crispr crispr-target crispr-cas9 grna rpackage grna-sequence bioconductor-package crispr-design grna-sequences
R
•
MIT License
•0•5•1•0•Updated Jul 23, 2024Jul 23, 2024
kaori
Public
C++ library for barcode counting
C++
•
MIT License
•0•0•2•0•Updated Jul 18, 2024Jul 18, 2024
crisprScreen
Public
0•0•0•0•Updated Jul 16, 2024Jul 16, 2024
crisprViz
Public
Visualization of CRISPR guide RNAs (gRNAs)
visualization bioconductor crispr-analysis crispr grna grna-sequence bioconductor-package sgrna crispr-design sgrna-design
R
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MIT License
•1•8•0•0•Updated Apr 2, 2024Apr 2, 2024
crisprShiny
Public
Shiny interface for CRISPR gRNAs designed with the crisprVerse
shiny crispr-analysis crispr crispr-design
R
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MIT License
•0•2•0•0•Updated Jan 31, 2024Jan 31, 2024
Rbwa
Public
R wrapper for BWA-backtrack and BWA-MEM aligners
alignment bwa bwa-mem dna-sequences dna-sequencing
C
•
MIT License
•1•1•0•0•Updated Jun 29, 2023Jun 29, 2023
crisprVerse
Public
Collection of R packages that work in harmony for CRISPR gRNA design
crispr-analysis crispr crispr-target grna grna-sequence crispr-design grna-sequences
R
•
MIT License
•0•13•1•0•Updated Feb 28, 2023Feb 28, 2023
crisprVersePaper
Public
Manuscript and analyses for crisprVerse manuscript
TeX
•0•2•0•0•Updated Oct 20, 2022Oct 20, 2022
Docker
Public
Dockerfile
•
MIT License
•1•0•1•0•Updated Sep 2, 2022Sep 2, 2022