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    441 repositories

    • cfa-epinow2-pipeline

      Public
      R
      •
      Apache License 2.0
      •7•11•24•5•Updated Mar 11, 2025Mar 11, 2025

    • cfa-config-generator

      Public
      Python
      •
      Apache License 2.0
      •2•1•3•2•Updated Mar 11, 2025Mar 11, 2025

    • dibbs-vm

      Public
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •4•0•30•3•Updated Mar 11, 2025Mar 11, 2025

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •44•75•1.2k•185•Updated Mar 11, 2025Mar 11, 2025

    • NEDSS-Modernization

      Public
      Java
      •4•20•0•5•Updated Mar 11, 2025Mar 11, 2025

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •26•40•0•4•Updated Mar 11, 2025Mar 11, 2025

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •4•2•0•9•Updated Mar 11, 2025Mar 11, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •27•69•14•1•Updated Mar 11, 2025Mar 11, 2025

    • cfa-actions

      Public
      GitHub Actions by CDC's CFA team
      actionsgithub-actionsgha
      Python
      •6•4•7•1•Updated Mar 11, 2025Mar 11, 2025

    • NEDSS-DataReporting

      Public
      Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      •
      Apache License 2.0
      •3•0•0•5•Updated Mar 11, 2025Mar 11, 2025

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •4•6•36•1•Updated Mar 11, 2025Mar 11, 2025

    • RecordLinker

      Public
      The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      pythonsqlalchemyfastapi
      Python
      •
      Apache License 2.0
      •2•3•31•5•Updated Mar 11, 2025Mar 11, 2025

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      reactjsterraformgraphqlspring-boot
      Java
      •
      Creative Commons Zero v1.0 Universal
      •65•60•172•23•Updated Mar 11, 2025Mar 11, 2025

    • ixa-epi-isolation

      Public
      Rust
      •
      Apache License 2.0
      •2•1•12•5•Updated Mar 11, 2025Mar 11, 2025

    • data-exchange-processing-status

      Public
      The Public Health Data Observability (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.
      Kotlin
      •
      Apache License 2.0
      •2•3•0•4•Updated Mar 11, 2025Mar 11, 2025

    • ixa

      Public
      Rust
      •
      Apache License 2.0
      •3•14•39•7•Updated Mar 11, 2025Mar 11, 2025

    • NEDSS-NNDSS-Case-Notifications

      Public
      Dockerfile
      •
      Apache License 2.0
      •1•0•0•1•Updated Mar 11, 2025Mar 11, 2025

    • cfa-immunization-uptake-projection

      Public
      Python
      •
      Apache License 2.0
      •3•1•14•1•Updated Mar 11, 2025Mar 11, 2025

    • prime-simplereport-site

      Public
      Landing / marketing site for the SimpleReport application
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •11•11•8•4•Updated Mar 11, 2025Mar 11, 2025

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •3•8•65•3•Updated Mar 11, 2025Mar 11, 2025

    • zoe

      Public
      Zoe provides both broad and highly specialized implementations for bioinformatics. In particular, we focus on common data formats and methods relevant for the sequencing of RNA viruses.
      bioinformaticsncird-idcdc-influenza-division
      Rust
      •
      Apache License 2.0
      •1•3•1•0•Updated Mar 11, 2025Mar 11, 2025

    • dibbs-ecr-viewer

      Public
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •2•2•84•5•Updated Mar 11, 2025Mar 11, 2025

    • SaviR

      Public
      The purpose of SaviR is to collect the functions needed to access and prepare various COVID data sources.
      R
      •
      Apache License 2.0
      •10•19•5•1•Updated Mar 11, 2025Mar 11, 2025

    • wastewater-informed-covid-forecasting

      Public
      Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
      R
      •
      Apache License 2.0
      •15•47•86•6•Updated Mar 11, 2025Mar 11, 2025

    • flu-antiviral-model

      Public
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • lib-hl7v2-nist-validator

      Public
      The lib-hl7v2-nist-validator is a wrapper around the NIST HL7v2 Validator.
      Kotlin
      •
      Other
      •3•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • WDPB_CryptoSSU

      Public
      Apache License 2.0
      •2•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • NEDSS-NNDSS

      Public
      Java
      •
      Apache License 2.0
      •3•0•0•2•Updated Mar 11, 2025Mar 11, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •3•2•0•0•Updated Mar 10, 2025Mar 10, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •7•7•0•0•Updated Mar 10, 2025Mar 10, 2025