deploy: 02fd316

martinjrobins · Mar 10, 2025 · a9f08e2 · a9f08e2
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diff --git a/404.html b/404.html
@@ -26,9 +26,9 @@
         <link rel="stylesheet" href="fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="highlight.css">
-        <link rel="stylesheet" href="tomorrow-night.css">
-        <link rel="stylesheet" href="ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="ayu-highlight.css">
 
         <!-- Custom theme stylesheets -->
 

diff --git a/benchmarks/benchmarks.html b/benchmarks/benchmarks.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
         <!-- Custom theme stylesheets -->
 

diff --git a/benchmarks/python.html b/benchmarks/python.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
         <!-- Custom theme stylesheets -->
 

diff --git a/benchmarks/sundials.html b/benchmarks/sundials.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
         <!-- Custom theme stylesheets -->
 

diff --git a/book.js b/book.js
@@ -111,11 +111,11 @@ function playground_text(playground, hidden = true) {
         let text = playground_text(code_block);
         let classes = code_block.querySelector('code').classList;
         let edition = "2015";
-        if(classes.contains("edition2018")) {
-            edition = "2018";
-        } else if(classes.contains("edition2021")) {
-            edition = "2021";
-        }
+        classes.forEach(className => {
+            if (className.startsWith("edition")) {
+                edition = className.slice(7);
+            }
+        });
         var params = {
             version: "stable",
             optimize: "0",
@@ -294,9 +294,9 @@ function playground_text(playground, hidden = true) {
         themeIds.push(el.id);
     });
     var stylesheets = {
-        ayuHighlight: document.querySelector("[href$='ayu-highlight.css']"),
-        tomorrowNight: document.querySelector("[href$='tomorrow-night.css']"),
-        highlight: document.querySelector("[href$='highlight.css']"),
+        ayuHighlight: document.querySelector("#ayu-highlight-css"),
+        tomorrowNight: document.querySelector("#tomorrow-night-css"),
+        highlight: document.querySelector("#highlight-css"),
     };
 
     function showThemes() {

diff --git a/choosing_a_solver.html b/choosing_a_solver.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="highlight.css">
-        <link rel="stylesheet" href="tomorrow-night.css">
-        <link rel="stylesheet" href="ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="ayu-highlight.css">
 
         <!-- Custom theme stylesheets -->
 

diff --git a/fonts/fonts.css b/fonts/fonts.css
@@ -7,7 +7,7 @@
   font-style: normal;
   font-weight: 300;
   src: local('Open Sans Light'), local('OpenSans-Light'),
-       url('open-sans-v17-all-charsets-300.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-300.woff2') format('woff2');
 }
 
 /* open-sans-300italic - latin_vietnamese_latin-ext_greek-ext_greek_cyrillic-ext_cyrillic */
@@ -16,7 +16,7 @@
   font-style: italic;
   font-weight: 300;
   src: local('Open Sans Light Italic'), local('OpenSans-LightItalic'),
-       url('open-sans-v17-all-charsets-300italic.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-300italic.woff2') format('woff2');
 }
 
 /* open-sans-regular - latin_vietnamese_latin-ext_greek-ext_greek_cyrillic-ext_cyrillic */
@@ -25,7 +25,7 @@
   font-style: normal;
   font-weight: 400;
   src: local('Open Sans Regular'), local('OpenSans-Regular'),
-       url('open-sans-v17-all-charsets-regular.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-regular.woff2') format('woff2');
 }
 
 /* open-sans-italic - latin_vietnamese_latin-ext_greek-ext_greek_cyrillic-ext_cyrillic */
@@ -34,7 +34,7 @@
   font-style: italic;
   font-weight: 400;
   src: local('Open Sans Italic'), local('OpenSans-Italic'),
-       url('open-sans-v17-all-charsets-italic.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-italic.woff2') format('woff2');
 }
 
 /* open-sans-600 - latin_vietnamese_latin-ext_greek-ext_greek_cyrillic-ext_cyrillic */
@@ -43,7 +43,7 @@
   font-style: normal;
   font-weight: 600;
   src: local('Open Sans SemiBold'), local('OpenSans-SemiBold'),
-       url('open-sans-v17-all-charsets-600.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-600.woff2') format('woff2');
 }
 
 /* open-sans-600italic - latin_vietnamese_latin-ext_greek-ext_greek_cyrillic-ext_cyrillic */
@@ -52,7 +52,7 @@
   font-style: italic;
   font-weight: 600;
   src: local('Open Sans SemiBold Italic'), local('OpenSans-SemiBoldItalic'),
-       url('open-sans-v17-all-charsets-600italic.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-600italic.woff2') format('woff2');
 }
 
 /* open-sans-700 - latin_vietnamese_latin-ext_greek-ext_greek_cyrillic-ext_cyrillic */
@@ -61,7 +61,7 @@
   font-style: normal;
   font-weight: 700;
   src: local('Open Sans Bold'), local('OpenSans-Bold'),
-       url('open-sans-v17-all-charsets-700.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-700.woff2') format('woff2');
 }
 
 /* open-sans-700italic - latin_vietnamese_latin-ext_greek-ext_greek_cyrillic-ext_cyrillic */
@@ -70,7 +70,7 @@
   font-style: italic;
   font-weight: 700;
   src: local('Open Sans Bold Italic'), local('OpenSans-BoldItalic'),
-       url('open-sans-v17-all-charsets-700italic.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-700italic.woff2') format('woff2');
 }
 
 /* open-sans-800 - latin_vietnamese_latin-ext_greek-ext_greek_cyrillic-ext_cyrillic */
@@ -79,7 +79,7 @@
   font-style: normal;
   font-weight: 800;
   src: local('Open Sans ExtraBold'), local('OpenSans-ExtraBold'),
-       url('open-sans-v17-all-charsets-800.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-800.woff2') format('woff2');
 }
 
 /* open-sans-800italic - latin_vietnamese_latin-ext_greek-ext_greek_cyrillic-ext_cyrillic */
@@ -88,13 +88,13 @@
   font-style: italic;
   font-weight: 800;
   src: local('Open Sans ExtraBold Italic'), local('OpenSans-ExtraBoldItalic'),
-       url('open-sans-v17-all-charsets-800italic.woff2') format('woff2');
+       url('../fonts/open-sans-v17-all-charsets-800italic.woff2') format('woff2');
 }
 
 /* source-code-pro-500 - latin_vietnamese_latin-ext_greek_cyrillic-ext_cyrillic */
 @font-face {
   font-family: 'Source Code Pro';
   font-style: normal;
   font-weight: 500;
-  src: url('source-code-pro-v11-all-charsets-500.woff2') format('woff2');
+  src: url('../fonts/source-code-pro-v11-all-charsets-500.woff2') format('woff2');
 }
diff --git a/index.html b/index.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="fonts/fonts.css">
 
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-        <link rel="stylesheet" href="highlight.css">
-        <link rel="stylesheet" href="tomorrow-night.css">
-        <link rel="stylesheet" href="ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="ayu-highlight.css">
 
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diff --git a/primer/backwards_sensitivity_analysis.html b/primer/backwards_sensitivity_analysis.html
@@ -25,9 +25,9 @@
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-        <link rel="stylesheet" href="../tomorrow-night.css">
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+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/bouncing_ball.html b/primer/bouncing_ball.html
@@ -25,9 +25,9 @@
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-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
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diff --git a/primer/compartmental_models_of_drug_delivery.html b/primer/compartmental_models_of_drug_delivery.html
@@ -25,9 +25,9 @@
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-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/discrete_events.html b/primer/discrete_events.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
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-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
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+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/electrical_circuits.html b/primer/electrical_circuits.html
@@ -25,9 +25,9 @@
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         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/first_order_odes.html b/primer/first_order_odes.html
@@ -25,9 +25,9 @@
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-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/forward_sensitivity_analysis.html b/primer/forward_sensitivity_analysis.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/heat_equation.html b/primer/heat_equation.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/higher_order_odes.html b/primer/higher_order_odes.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/modelling_with_diffsol.html b/primer/modelling_with_diffsol.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/pdes.html b/primer/pdes.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
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-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
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diff --git a/primer/physics_based_battery_simulation.html b/primer/physics_based_battery_simulation.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/population_dynamics.html b/primer/population_dynamics.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
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diff --git a/primer/population_dynamics_fitting.html b/primer/population_dynamics_fitting.html
@@ -25,9 +25,9 @@
         <link rel="stylesheet" href="../fonts/fonts.css">
 
         <!-- Highlight.js Stylesheets -->
-        <link rel="stylesheet" href="../highlight.css">
-        <link rel="stylesheet" href="../tomorrow-night.css">
-        <link rel="stylesheet" href="../ayu-highlight.css">
+        <link rel="stylesheet" id="highlight-css" href="../highlight.css">
+        <link rel="stylesheet" id="tomorrow-night-css" href="../tomorrow-night.css">
+        <link rel="stylesheet" id="ayu-highlight-css" href="../ayu-highlight.css">
 
         <!-- Custom theme stylesheets -->
 
@@ -251,7 +251,7 @@ <h1 id="fitting-a-predator-prey-model-to-data"><a class="header" href="#fitting-
 }</code></pre>
 <p>With these implementation out of the way, we can now perform the fitting problem. We'll generate some synthetic data using the Lotka-Volterra equations with some true parameters, and then fit the model to this data. We'll use the <code>LBFGS</code> solver from the argmin crate, which is a quasi-Newton method that uses the Broyden-Fletcher-Goldfarb-Shanno (BFGS) update formula. We'll also use the <code>SlogLogger</code> observer to log the progress of the optimisation.</p>
 <p>We'll initialise the optimizer a short distance away from the true parameter values, and then check the final optimised parameter values against the true values.</p>
-<pre><code class="language-rust ignore">fn main() {
+<pre><code class="language-rust ignore">pub fn main() {
     let eqn = DiffSl::&lt;M, CG&gt;::compile(
         "
             in = [ b, d ]