Start comparing HCV references, as part of #441.

Remove ERCC references, because we don't need to support them anymore.
cfe-lab · Apr 11, 2019 · 3f8afea · 3f8afea
1 parent 1c192fe
commit 3f8afea
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Showing 4 changed files with 263 additions and 608 deletions.
diff --git a/micall/project_scoring.json b/micall/project_scoring.json
@@ -2,136 +2,7 @@
   "projects": {
     "ERCC": {
       "max_variants": 0,
-      "regions": [
-        {
-          "coordinate_region": "ERCC-00002",
-          "coordinate_region_length": 353,
-          "key_positions": [
-            {
-              "end_pos": 348,
-              "start_pos": 6
-            }
-          ],
-          "min_coverage1": 1,
-          "min_coverage2": 101,
-          "min_coverage3": 1001,
-          "seed_region_names": [
-            "ERCC-00002-seed"
-          ]
-        },
-        {
-          "coordinate_region": "ERCC-00003",
-          "coordinate_region_length": 340,
-          "key_positions": [
-            {
-              "end_pos": 335,
-              "start_pos": 6
-            }
-          ],
-          "min_coverage1": 1,
-          "min_coverage2": 101,
-          "min_coverage3": 1001,
-          "seed_region_names": [
-            "ERCC-00003-seed"
-          ]
-        },
-        {
-          "coordinate_region": "ERCC-00007",
-          "coordinate_region_length": 378,
-          "key_positions": [
-            {
-              "end_pos": 373,
-              "start_pos": 6
-            }
-          ],
-          "min_coverage1": 1,
-          "min_coverage2": 101,
-          "min_coverage3": 1001,
-          "seed_region_names": [
-            "ERCC-00007-seed"
-          ]
-        },
-        {
-          "coordinate_region": "ERCC-00014",
-          "coordinate_region_length": 652,
-          "key_positions": [
-            {
-              "end_pos": 647,
-              "start_pos": 6
-            }
-          ],
-          "min_coverage1": 1,
-          "min_coverage2": 101,
-          "min_coverage3": 1001,
-          "seed_region_names": [
-            "ERCC-00014-seed"
-          ]
-        },
-        {
-          "coordinate_region": "ERCC-00017",
-          "coordinate_region_length": 378,
-          "key_positions": [
-            {
-              "end_pos": 373,
-              "start_pos": 6
-            }
-          ],
-          "min_coverage1": 1,
-          "min_coverage2": 101,
-          "min_coverage3": 1001,
-          "seed_region_names": [
-            "ERCC-00017-seed"
-          ]
-        },
-        {
-          "coordinate_region": "ERCC-00025",
-          "coordinate_region_length": 664,
-          "key_positions": [
-            {
-              "end_pos": 659,
-              "start_pos": 6
-            }
-          ],
-          "min_coverage1": 1,
-          "min_coverage2": 101,
-          "min_coverage3": 1001,
-          "seed_region_names": [
-            "ERCC-00025-seed"
-          ]
-        },
-        {
-          "coordinate_region": "ERCC-00033",
-          "coordinate_region_length": 673,
-          "key_positions": [
-            {
-              "end_pos": 668,
-              "start_pos": 6
-            }
-          ],
-          "min_coverage1": 1,
-          "min_coverage2": 101,
-          "min_coverage3": 1001,
-          "seed_region_names": [
-            "ERCC-00033-seed"
-          ]
-        },
-        {
-          "coordinate_region": "ERCC-00099",
-          "coordinate_region_length": 449,
-          "key_positions": [
-            {
-              "end_pos": 444,
-              "start_pos": 6
-            }
-          ],
-          "min_coverage1": 1,
-          "min_coverage2": 101,
-          "min_coverage3": 1001,
-          "seed_region_names": [
-            "ERCC-00099-seed"
-          ]
-        }
-      ]
+      "regions": []
     },
     "HCV": {
       "max_variants": 0,