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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 135 47

Repositories

Showing 10 of 107 repositories
  • smallgenomeutilities Public

    smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.

    cbg-ethz/smallgenomeutilities’s past year of commit activity
    Python 11 GPL-2.0 8 5 2 Updated Mar 12, 2025
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 0 MIT 0 6 4 Updated Mar 11, 2025
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 1 MIT 0 16 (1 issue needs help) 3 Updated Mar 11, 2025
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 135 Apache-2.0 47 34 (4 issues need help) 5 Updated Mar 11, 2025
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 2 2 Updated Mar 10, 2025
  • cowwid Public

    Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.

    cbg-ethz/cowwid’s past year of commit activity
    Jupyter Notebook 7 0 1 0 Updated Mar 10, 2025
  • VILOCA Public

    VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

    cbg-ethz/VILOCA’s past year of commit activity
    Python 17 GPL-3.0 1 4 0 Updated Mar 10, 2025
  • conda_stats_gather Public

    Used to track downloads of bioconda packages used by V-pipe, see: https://cbg-ethz.github.io/V-pipe/pipeline/

    cbg-ethz/conda_stats_gather’s past year of commit activity
    Perl 0 0 0 0 Updated Mar 5, 2025
  • RSV-wastewater-V-pipe Public

    Wastewater-derived Respiratory Syncytial Virus data analysis

    cbg-ethz/RSV-wastewater-V-pipe’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 5, 2025
  • fairClust Public
    cbg-ethz/fairClust’s past year of commit activity
    R 1 MIT 0 0 0 Updated Mar 5, 2025
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