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Issues list

Provide source or sink as Parquet
#484 by caufieldjh was closed Apr 11, 2024
1
Obsolete/Deprecated property is not populated when converting from obojson bug Something isn't working
#470 by kevinschaper was closed Nov 7, 2023
@RichardBruskiewich
15
Relax KGX's pandas version dependency.
#461 by hrshdhgd was closed Jul 12, 2023
1
When translating kgx tsvs to ntriples, type assertions are wrong
#445 by matentzn was closed Apr 17, 2023
add SQL sink enhancement New feature or request
#443 by sierra-moxon was closed Apr 4, 2023
run kgx validate from inside the project - need scripts defined in pyproject.toml bug Something isn't working
#432 by sierra-moxon was closed Mar 21, 2023
@sierra-moxon
2
Fetching biolink-model for validate is confused by v in biolink version bug Something isn't working
#431 by kevinschaper was closed Mar 14, 2023
@kevinschaper
1
remove pinning of docutils==0.16.0 so that downstream users can also use sphinx bug Something isn't working
#423 by sierra-moxon was closed Feb 14, 2023
@sierra-moxon
Error occurs when specifying a version starting with "v" in get_biolink_model_schema method bug Something isn't working
#421 by daikiad was closed Feb 14, 2023
1
Do the KGX serialization formats support representation of Biolink qualifiers?
#420 by bill-baumgartner was closed Dec 14, 2022
2
TSV->TSV transform ignores transform-level metadata about knowledge sources bug Something isn't working
#407 by sierra-moxon was closed Aug 16, 2022
remove knowledge source parameters from node files (instead rely on provided_by for nodes) bug Something isn't working
#404 by sierra-moxon was closed Aug 12, 2022
4
migrate KGX to poetry enhancement New feature or request
#403 by sierra-moxon was closed Feb 14, 2023
3 tasks
1
Neo4j 4.x empty after loading with kgx transform bug Something isn't working
#402 by kevinschaper was closed Jul 21, 2022
1
Create citable archive on Zenodo
#401 by cthoyt was closed Aug 13, 2022
2
Set the provided_by of nodes.tsv as an option enhancement New feature or request
#400 by 0m1n0 was closed Aug 13, 2022
3
Edge attribute JSON is stringified bug Something isn't working
#399 by maximusunc was closed Aug 11, 2022
Does Sphinx need to be anchored between versions (sphinx<5,>=3.1)
#395 by hrshdhgd was closed Jun 8, 2022
2
Questions about clique_merge
#391 by frdougal was closed May 20, 2022
3
The neo4j docker image doesn't work on M1 macs as described in doc bug Something isn't working
#389 by goodb was closed May 20, 2022
1
Make stream processing the default mode for validation and graph summaries; possibly transform in general; maybe remove --stream option for these commands
#384 by RichardBruskiewich was closed Apr 22, 2022
@RichardBruskiewich
1
Clean up tests, code around provided_by. enhancement New feature or request
#383 by sierra-moxon was closed Aug 13, 2022
3 tasks
kgx_validate sometimes hangs bug Something isn't working
#379 by sierra-moxon was closed Jun 15, 2022
1
Duplication of identifiers in pipe-delimited slot value lists
#373 by RichardBruskiewich was closed Nov 2, 2022
3
pip dependency conflict?
#371 by RichardBruskiewich was closed Feb 23, 2022
2
@sierra-moxon
3
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