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Develop #17

Merged
merged 65 commits into from
Jun 1, 2022
Merged

Develop #17

merged 65 commits into from
Jun 1, 2022
+6,880 −12,660

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ferzcam
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@ferzcam ferzcam commented Jun 1, 2022

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ferzcam and others added 30 commits February 23, 2022 02:18
@ferzcam
before pulling

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Learn about vigilant mode
52874eb
@ferzcam
fix conflicts

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This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
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Learn about vigilant mode
db43f4e
@ferzcam
update
1949f2d
@ferzcam
🎨 update taxonomy parser to parse with transitve closure (subclass)
61be61c
@ferzcam
🐛 fix bug in DL2Vec model. Now it accepts empty test set
7ce50de
@ferzcam
🐛 fix missing _testing attribute error
c6ce270
@ferzcam
🎨 catEmbeddings: fix nf1loss
452465e
@ferzcam
✨ beginning evaluation framework
dc78163
@ferzcam
🐛 support empty testing dataset
5a18afa
@ferzcam
🐛 translational model supports empty testing dataset
10b89d6
@ferzcam
🐛 translational model supports empty testing dataset
71e179e
@ferzcam
🎨 CatEmbeddings new notebooks and updates
687d45d
@ferzcam
✨ New functions to add annotations to ontologies
a5733c3
@ferzcam
📝 update docs
872b2fd
@ferzcam
Merge branch 'docs' of https://github.com/bio-ontology-research-group…
1ca8b61 
…/mowl into docs
@ferzcam
📝 update docs
708865f
@ferzcam
📝 update docs
b04a5d5
@ferzcam
.
51cf60c
@ferzcam
Merge branch 'develop' of https://github.com/bio-ontology-research-gr…
dbae9aa 
…oup/mowl into develop
@ferzcam
📝 Added list of contributors
007fa7a
@ferzcam
📝 Added list of contributors
9abf7b4
@ferzcam
🐛 fix name of annotations
f5b9b7e
@ferzcam
Merge branch 'develop' of https://github.com/bio-ontology-research-gr…
4882f0b 
…oup/mowl into develop
@ferzcam
🐛 enable dl2vec model to save walks
c11ab7d
@ferzcam
🐛 enable dl2vec model to save walks
74ca79a
@ferzcam
Merge branch 'develop' into docs
6343dbb
@ferzcam
🐛 enable owl2vec model to save walks
7054f5e
@ferzcam
🐛 fix owl2vec parsing for complex subclasses
c0c7c32
@ferzcam
📝 Updated docs
abc138d
@ferzcam
📝 updated tutorial section
b752a34
ferzcam added 29 commits April 27, 2022 14:45
@ferzcam
tmp
f141c25
@ferzcam
🐛 insert_annotations method:allow prefixes in document
c2dd076
@ferzcam
Merge branch 'docs' into develop
37b008f
@ferzcam
🎨 Changed name Parsers to Projectors
0d6133d
@ferzcam
🎨 updated dl2vec model
61e7007
@ferzcam
🎨 ✨ user can define amount of jvm memory
f80b6e2
@ferzcam
🎨 update create_from_triples method
5f52417
@ferzcam
🎨 updated Model class
603a84f
@ferzcam
🎨 ✨ 🐛 fixed evaluation bugs, added rank based evaluator
5faed41
@ferzcam
🎨 ♻️ updated onto2vec using the new reasoning module
c6c0cea
@ferzcam
🎨 ♻️ updated elembeddings using the new reasoning module
a0ba8d6
@ferzcam
⚗️ update notebooks
78817ca
@ferzcam
✨ 👔 create reasoning, visualization and corpus modules
a57aa01
@ferzcam
🚧 fixing deepwalk and node2vec to include edge labels
6f2a1b1
@ferzcam
🎨 ✅ Finished update of DeepWalk and Node2Vec to include edge labels. …
9143b2c 
…Passed some test
@ferzcam
🚧 redesigning Model class
63e95a3
@ferzcam
🎨
5dbf5e9
@ferzcam
🚧 updating Translational Embeddings
aabebcf
@ferzcam
🔥 removed walkRdfAndOwl as walking method as now it is equivalent to …
9706d27 
…DeepWalk with edge labels
@ferzcam
🎨 added zipping method in Edge class
57f8e76
@ferzcam
.
f2a64af
@ferzcam
Merge branch 'develop' of https://github.com/bio-ontology-research-gr…
0da8096 
…oup/mowl into develop
@ferzcam
🎨 updated models
3abbfcf
@ferzcam
🎨 update on methods for creating datasets
1f644c3
@ferzcam
✨ extend EL normalization to 7 normal forms
d09f822
@ferzcam
🎨 update model class
c9cb0fb
@ferzcam
🎨 🚧 update evaluation module. Working but still on development
fdac893
@ferzcam
🎨 update elembeddings model to make it compatible with the evaluation…
f3bf2a0 
… module
@ferzcam
🎨 update elembeddings model to make it compatible with the evaluation…
86e4695 
… module
@ferzcam ferzcam merged commit 4cdc17d into master Jun 1, 2022
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