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ARTICnetwork

This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.

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  1. artic-ncov2019 artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    Python 169 164

  2. fieldbioinformatics fieldbioinformatics Public

    Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    Python 120 66

  3. rampart rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    JavaScript 80 33

  4. civet civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 50 14

  5. primer-schemes primer-schemes Public

    Primer schemes for real-time genome epidemiology

    Python 27 42

  6. readucks readucks Public

    Nanopore read de-multiplexer

    Python 13 4

Repositories

Showing 10 of 37 repositories
  • rampart-nf Public

    Nextflow wrapper for RAMPART

    artic-network/rampart-nf’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Mar 9, 2025
  • fieldbioinformatics Public Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    artic-network/fieldbioinformatics’s past year of commit activity
    Python 120 MIT 87 5 0 Updated Mar 9, 2025
  • phylofunk Public
    artic-network/phylofunk’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Mar 8, 2025
  • aubergine Public
    artic-network/aubergine’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 7, 2025
  • rampart-mpxv Public
    artic-network/rampart-mpxv’s past year of commit activity
    Dockerfile 0 1 0 0 Updated Mar 5, 2025
  • rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    artic-network/rampart’s past year of commit activity
    JavaScript 80 GPL-3.0 33 28 17 Updated Mar 5, 2025
  • primalscheme3 Public

    Primalscheme3. Generation of highly multiplex primerschemes

    artic-network/primalscheme3’s past year of commit activity
    Python 12 GPL-3.0 2 2 0 Updated Mar 2, 2025
  • artic-mpxv-illumina-nf Public Forked from BCCDC-PHL/mpxv-artic-nf
    artic-network/artic-mpxv-illumina-nf’s past year of commit activity
    Python 2 MIT 4 0 0 Updated Feb 12, 2025
  • artic-mpxv-nf Public Forked from epi2me-labs/wf-artic

    ARTIC Epi2me compatible workflow and reporting

    artic-network/artic-mpxv-nf’s past year of commit activity
    Nextflow 3 36 0 0 Updated Feb 12, 2025
  • ebolavirus Public

    A repository of information and resources about viruses in the genus Ebolavirus

    artic-network/ebolavirus’s past year of commit activity
    1 1 1 1 Updated Jan 31, 2025
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