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Change dot and the Faddeeva functions to use new complex return possibility and remove the Faddeeva wrapper. #2146

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Jan 28, 2013
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2 changes: 1 addition & 1 deletion Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -48,7 +48,7 @@ JL_LIBS = julia-release julia-debug
# private libraries, that are installed in $(PREFIX)/lib/julia
JL_PRIVATE_LIBS = amd arpack cholmod colamd fftw3 fftw3f fftw3_threads \
fftw3f_threads glpk glpk_wrapper gmp gmp_wrapper grisu \
history Faddeeva_wrapper openlibm openlibm-extras pcre \
history openlibm openlibm-extras pcre \
random readline Rmath spqr suitesparse_wrapper \
tk_wrapper umfpack z openblas

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31 changes: 27 additions & 4 deletions base/blas.jl
Original file line number Diff line number Diff line change
Expand Up @@ -72,19 +72,42 @@ for (fname, elty) in ((:dscal_,:Float64), (:sscal_,:Float32),
end
end

# ccall is unable to return complex values (Issue #85)
#@blas_dot :zdotc_ Complex128
#@blas_dot :cdotc_ Complex64
# DOUBLE PRECISION FUNCTION DDOT(N,DX,INCX,DY,INCY)
# dot
for (fname, elty) in ((:ddot_,:Float64), (:sdot_,:Float32))
@eval begin
# DOUBLE PRECISION FUNCTION DDOT(N,DX,INCX,DY,INCY)
# * .. Scalar Arguments ..
# INTEGER INCX,INCY,N
# * ..
# * .. Array Arguments ..
# DOUBLE PRECISION DX(*),DY(*)
function dot(n::Integer, DX::Union(Ptr{$elty},Array{$elty}), incx::Integer, DY::Union(Ptr{$elty},Array{$elty}), incy::Integer)
ccall(($(string(fname)),libblas), $elty,
(Ptr{BlasInt}, Ptr{$elty}, Ptr{BlasInt}, Ptr{$elty}, Ptr{BlasInt}),
&n, DX, &incx, DY, &incy)
end
end
end
for (fname, elty, relty) in ((:zdotc_,:Complex128,:Float64), (:cdotc_,:Complex64,:Float32))
@eval begin
# DOUBLE COMPLEX FUNCTION ZDOTC(N,ZX,INCX,ZY,INCY)
# * .. Scalar Arguments ..
# INTEGER INCX,INCY,N
# * ..
# * .. Array Arguments ..
# DOUBLE COMPLEX ZX(*),ZY(*)
function dot(n::Integer, DX::Union(Ptr{$elty},Array{$elty}), incx::Integer, DY::Union(Ptr{$elty},Array{$elty}), incy::Integer)
convert($elty, ccall(($(string(fname)),libblas), ComplexPair{$relty},
(Ptr{BlasInt}, Ptr{$elty}, Ptr{BlasInt}, Ptr{$elty}, Ptr{BlasInt}),
&n, DX, &incx, DY, &incy))
end
end
end
function dot{T<:BlasFloat}(DX::Array{T}, DY::Array{T})
n = length(DX)
if n != length(DY) throw(BlasDimMisMatch) end
return dot(n, DX, 1, DY, 1)
end

# DOUBLE PRECISION FUNCTION DNRM2(N,X,INCX)
for (fname, elty, ret_type) in ((:dnrm2_,:Float64,:Float64),
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14 changes: 2 additions & 12 deletions base/math.jl
Original file line number Diff line number Diff line change
Expand Up @@ -667,21 +667,11 @@ function zeta(z::Number)
end
@vectorize_1arg Number zeta

const Faddeeva_tmp = Array(Float64,2)

# wrappers for complex Faddeeva functions; these will get a lot simpler,
# and can call openopenlibm_extras directly, once ccall supports C99 complex types.
for f in (:erf, :erfc, :erfcx, :erfi, :Dawson)
fname = (f === :Dawson) ? :dawson : f
@eval begin
function ($fname)(z::Complex128)
ccall(($(string("wrapFaddeeva_",f)),:libFaddeeva_wrapper), Void, (Ptr{Complex128},Ptr{Complex128},Float64,), Faddeeva_tmp, &z, zero(Float64))
return complex128(Faddeeva_tmp[1],Faddeeva_tmp[2])
end
function ($fname)(z::Complex64)
ccall(($(string("wrapFaddeeva_",f)),:libFaddeeva_wrapper), Void, (Ptr{Complex128},Ptr{Complex128},Float64,), Faddeeva_tmp, &complex128(z), float64(eps(Float32)))
return complex64(Faddeeva_tmp[1],Faddeeva_tmp[2])
end
($fname)(z::Complex128) = complex128(ccall(($(string("Faddeeva_",f)),openlibm_extras), ComplexPair{Float64}, (ComplexPair{Float64}, Float64), z, zero(Float64)))
($fname)(z::Complex64) = complex64(ccall(($(string("Faddeeva_",f)),openlibm_extras), ComplexPair{Float64}, (ComplexPair{Float64}, Float64), complex128(z), float64(eps(Float32))))
($fname)(z::Complex) = ($fname)(complex128(z))
end
end
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15 changes: 5 additions & 10 deletions base/matmul.jl
Original file line number Diff line number Diff line change
Expand Up @@ -36,29 +36,24 @@ diagmm(b::Vector, A::Matrix) =

# Dot products

function dot{T<:Union(Vector{Float64}, Vector{Float32})}(x::T, y::T)
length(x) != length(y) ? error("Inputs should be of same length") : true
BLAS.dot(length(x), x, 1, y, 1)
end

function dot{T<:Union(Float64, Float32), TI<:Integer}(x::Vector{T}, rx::Union(Range1{TI},Range{TI}), y::Vector{T}, ry::Union(Range1{TI},Range{TI}))
dot{T<:BLAS.BlasFloat}(x::Vector{T}, y::Vector{T}) = BLAS.dot(x, y)
function dot{T<:BLAS.BlasFloat, TI<:Integer}(x::Vector{T}, rx::Union(Range1{TI},Range{TI}), y::Vector{T}, ry::Union(Range1{TI},Range{TI}))
length(rx) != length(ry) ? error("Ranges should be of same length") : true
if min(rx) < 1 || max(rx) > length(x) || min(ry) < 1 || max(ry) > length(y)
throw(BoundsError())
end
BLAS.dot(length(rx), pointer(x)+(first(rx)-1)*sizeof(T), step(rx), pointer(y)+(first(ry)-1)*sizeof(T), step(ry))
end

Ac_mul_B(x::Vector, y::Vector) = [dot(x, y)]
At_mul_B{T<:Real}(x::Vector{T}, y::Vector{T}) = [dot(x, y)]

function dot(x::Vector, y::Vector)
s = zero(eltype(x))
for i=1:length(x)
s += conj(x[i])*y[i]
end
s
end
dot(x::Number, y::Number) = conj(x) * y
Ac_mul_B(x::Vector, y::Vector) = [dot(x, y)]
At_mul_B{T<:Real}(x::Vector{T}, y::Vector{T}) = [dot(x, y)]

dot(x::Number, y::Number) = conj(x) * y

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45 changes: 0 additions & 45 deletions deps/Faddeeva_wrapper.c

This file was deleted.

23 changes: 3 additions & 20 deletions deps/Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -20,13 +20,13 @@ endif

#autoconf configure-driven scripts: llvm readline pcre arpack fftw unwind gmp glpk patchelf
#custom configure-driven script: zlib nginx
#custom Makefile rules: openlibm Faddeeva-wrapper rmath double-conversion random gmp-wrapper suitesparse-wrapper suitesparse lapack openblas uv tk-wrapper
#custom Makefile rules: openlibm rmath double-conversion random gmp-wrapper suitesparse-wrapper suitesparse lapack openblas uv tk-wrapper

# prevent installing libs into usr/lib64 on opensuse
unexport CONFIG_SITE

STAGE1_DEPS = uv openlibm-extras random rmath double-conversion
STAGE2_DEPS = gmp-wrapper Faddeeva-wrapper
STAGE2_DEPS = gmp-wrapper
STAGE3_DEPS = glpk-wrapper suitesparse-wrapper

ifeq ($(USE_SYSTEM_LIBUNWIND), 0)
Expand Down Expand Up @@ -551,24 +551,7 @@ get-openlibm-extras: openlibm/Makefile.extras
configure-openlibm-extras: get-openlibm-extras
compile-openlibm-extras: $(OPENLIBMEXT_OBJ_SOURCE)
check-openlibm-extras: compile-openlibm-extras
install-openlibm-extras: $(OPENLIBMEXT_OBJ_TARGET) $(BUILD)/lib/libFaddeeva_wrapper.$(SHLIB_EXT)

# Wrapper for openlibm/Faddeeva since ccall doesn't support C99 complex:
$(BUILD)/lib/libFaddeeva_wrapper.$(SHLIB_EXT): Faddeeva_wrapper.c $(OPENLIBMEXT_OBJ_TARGET)
$(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -O2 -shared $(fPIC) -I openlibm/Faddeeva Faddeeva_wrapper.c -o $@ -L $(BUILD)/lib -lopenlibm-extras $(RPATH_ORIGIN)
$(INSTALL_NAME_CMD)libFaddeeva_wrapper.$(SHLIB_EXT) $@
touch -c $@

clean-Faddeeva-wrapper:
-rm -f $(OPENLIBMEXT_OBJ_TARGET) $(BUILD)/lib/libFaddeeva_wrapper.$(SHLIB_EXT)
distclean-Faddeeva-wrapper: clean-Faddeeva-wrapper

get-Faddeeva-wrapper: get-openlibm
configure-Faddeeva-wrapper: get-openlibm
compile-Faddeeva-wrapper: $(BUILD)/lib/libFaddeeva_wrapper.$(SHLIB_EXT)
check-Faddeeva-wrapper: compile-Faddeeva-wrapper
install-Faddeeva-wrapper: $(BUILD)/lib/libFaddeeva_wrapper.$(SHLIB_EXT)

install-openlibm-extras: $(OPENLIBMEXT_OBJ_TARGET)

## LIBRANDOM ##

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