NGLView cannot show structure with waters

[cuzzo87]

I was using NGLview to visualize the system with the Molecule.view():

• protein as NewCartoon
• ligand as Licorice

The system contains also waters and if I did not remove them before calling the 'view' function I cannot see anything

**1) without removing waters **

m =Molecule('structure.pdb')
m.center()
m.reps.add('protein', 'NewCartoon' )
m.reps.add('resname MOL', 'Licorice')
config(viewer='ngl')
m.view()

2) removing the waters

m =Molecule('structure.pdb')
m.remove('waters')
m.center()
m.reps.add('protein', 'NewCartoon' )
m.reps.add('resname MOL', 'Licorice')
config(viewer='ngl')
m.view()

[stefdoerr]

Subscribe to nglview issues. I've already made one a week ago. It's fixed in their next release

…

On July 21, 2017 9:53:22 AM GMT+03:00, Alberto ***@***.***> wrote: I was using NGLview to visualize the system with the Molecule.view(): - protein as NewCartoon - ligand as Licorice The system contains also waters and if I did not remove them before calling the 'view' function I cannot see anything **1) without removing waters ** ``` m =Molecule('structure.pdb') m.center() m.reps.add('protein', 'NewCartoon' ) m.reps.add('resname MOL', 'Licorice') config(viewer='ngl') m.view() ```  **2) removing the waters** ``` m =Molecule('structure.pdb') m.remove('waters') m.center() m.reps.add('protein', 'NewCartoon' ) m.reps.add('resname MOL', 'Licorice') config(viewer='ngl') m.view() ```  -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: #402

-- Sent from my Android device with K-9 Mail. Please excuse my brevity.

[stefdoerr]

nglviewer/nglview#633