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cmdstanpy/_version.py

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"""PyPi Version"""
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__version__ = '1.0.6'
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__version__ = '1.0.7'

docs/_modules/cmdstanpy/cmdstan_args.html

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<title>cmdstanpy.cmdstan_args &#8212; CmdStanPy 1.0.6 documentation</title>
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<title>cmdstanpy.cmdstan_args &#8212; CmdStanPy 1.0.7 documentation</title>
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docs/_modules/cmdstanpy/compiler_opts.html

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<title>cmdstanpy.compiler_opts &#8212; CmdStanPy 1.0.6 documentation</title>
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<title>cmdstanpy.compiler_opts &#8212; CmdStanPy 1.0.7 documentation</title>
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docs/_modules/cmdstanpy/model.html

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docs/_modules/cmdstanpy/stanfit.html

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docs/_modules/cmdstanpy/stanfit/gq.html

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<title>cmdstanpy.stanfit.gq &#8212; CmdStanPy 1.0.6 documentation</title>
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@@ -692,10 +692,15 @@ <h1>Source code for cmdstanpy.stanfit.gq</h1><div class="highlight"><pre>
692692
<span class="n">col_idxs</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">stan_vars_cols</span><span class="p">[</span><span class="n">var</span><span class="p">]</span>
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<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">col_idxs</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
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<span class="n">dims</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">stan_vars_dims</span><span class="p">[</span><span class="n">var</span><span class="p">])</span>
695-
<span class="c1"># pylint: disable=redundant-keyword-arg</span>
696-
<span class="n">draws</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_draws</span><span class="p">[</span><span class="n">draw1</span><span class="p">:,</span> <span class="p">:,</span> <span class="n">col_idxs</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dims</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="s1">&#39;F&#39;</span><span class="p">)</span>
695+
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<span class="n">draws</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_draws</span><span class="p">[</span><span class="n">draw1</span><span class="p">:,</span> <span class="p">:,</span> <span class="n">col_idxs</span><span class="p">]</span>
697+
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<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">stan_vars_types</span><span class="p">[</span><span class="n">var</span><span class="p">]</span> <span class="o">==</span> <span class="n">BaseType</span><span class="o">.</span><span class="n">COMPLEX</span><span class="p">:</span>
698-
<span class="n">draws</span> <span class="o">=</span> <span class="n">draws</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">draws</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span>
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<span class="n">draws</span> <span class="o">=</span> <span class="n">draws</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="p">::</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">draws</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">1</span><span class="p">::</span><span class="mi">2</span><span class="p">]</span>
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<span class="n">dims</span> <span class="o">=</span> <span class="n">dims</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
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<span class="n">draws</span> <span class="o">=</span> <span class="n">draws</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dims</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="s1">&#39;F&#39;</span><span class="p">)</span>
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<span class="k">return</span> <span class="n">draws</span></div>
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<div class="viewcode-block" id="CmdStanGQ.stan_variables"><a class="viewcode-back" href="../../../api.html#cmdstanpy.CmdStanGQ.stan_variables">[docs]</a> <span class="k">def</span> <span class="nf">stan_variables</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">inc_warmup</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]:</span>

docs/_modules/cmdstanpy/stanfit/mcmc.html

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@@ -916,9 +916,14 @@ <h1>Source code for cmdstanpy.stanfit.mcmc</h1><div class="highlight"><pre>
916916
<span class="n">col_idxs</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">stan_vars_cols</span><span class="p">[</span><span class="n">var</span><span class="p">]</span>
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<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">col_idxs</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
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<span class="n">dims</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">stan_vars_dims</span><span class="p">[</span><span class="n">var</span><span class="p">])</span>
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<span class="n">draws</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_draws</span><span class="p">[</span><span class="n">draw1</span><span class="p">:,</span> <span class="p">:,</span> <span class="n">col_idxs</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dims</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="s1">&#39;F&#39;</span><span class="p">)</span>
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<span class="n">draws</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_draws</span><span class="p">[</span><span class="n">draw1</span><span class="p">:,</span> <span class="p">:,</span> <span class="n">col_idxs</span><span class="p">]</span>
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<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">stan_vars_types</span><span class="p">[</span><span class="n">var</span><span class="p">]</span> <span class="o">==</span> <span class="n">BaseType</span><span class="o">.</span><span class="n">COMPLEX</span><span class="p">:</span>
921-
<span class="n">draws</span> <span class="o">=</span> <span class="n">draws</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">draws</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span>
922+
<span class="n">draws</span> <span class="o">=</span> <span class="n">draws</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="p">::</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">draws</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">1</span><span class="p">::</span><span class="mi">2</span><span class="p">]</span>
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<span class="n">dims</span> <span class="o">=</span> <span class="n">dims</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
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<span class="n">draws</span> <span class="o">=</span> <span class="n">draws</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dims</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="s1">&#39;F&#39;</span><span class="p">)</span>
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<span class="k">return</span> <span class="n">draws</span></div>
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<div class="viewcode-block" id="CmdStanMCMC.stan_variables"><a class="viewcode-back" href="../../../api.html#cmdstanpy.CmdStanMCMC.stan_variables">[docs]</a> <span class="k">def</span> <span class="nf">stan_variables</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]:</span>

docs/_modules/cmdstanpy/stanfit/metadata.html

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docs/_modules/cmdstanpy/stanfit/mle.html

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@@ -387,12 +387,17 @@ <h1>Source code for cmdstanpy.stanfit.mle</h1><div class="highlight"><pre>
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<span class="n">dims</span> <span class="o">=</span> <span class="p">(</span><span class="n">num_rows</span><span class="p">,)</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">stan_vars_dims</span><span class="p">[</span><span class="n">var</span><span class="p">]</span>
388388
<span class="c1"># pylint: disable=redundant-keyword-arg</span>
389389
<span class="k">if</span> <span class="n">num_rows</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
390-
<span class="n">result</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_all_iters</span><span class="p">[:,</span> <span class="n">col_idxs</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dims</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="s1">&#39;F&#39;</span><span class="p">)</span>
390+
<span class="n">result</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_all_iters</span><span class="p">[:,</span> <span class="n">col_idxs</span><span class="p">]</span>
391391
<span class="k">else</span><span class="p">:</span>
392-
<span class="n">result</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_mle</span><span class="p">[</span><span class="n">col_idxs</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dims</span><span class="p">[</span><span class="mi">1</span><span class="p">:],</span> <span class="n">order</span><span class="o">=</span><span class="s2">&quot;F&quot;</span><span class="p">)</span>
392+
<span class="n">result</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_mle</span><span class="p">[</span><span class="n">col_idxs</span><span class="p">]</span>
393+
<span class="n">dims</span> <span class="o">=</span> <span class="n">dims</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
393394

394395
<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">stan_vars_types</span><span class="p">[</span><span class="n">var</span><span class="p">]</span> <span class="o">==</span> <span class="n">BaseType</span><span class="o">.</span><span class="n">COMPLEX</span><span class="p">:</span>
395-
<span class="n">result</span> <span class="o">=</span> <span class="n">result</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">result</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span>
396+
<span class="n">result</span> <span class="o">=</span> <span class="n">result</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="p">::</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">result</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">1</span><span class="p">::</span><span class="mi">2</span><span class="p">]</span>
397+
<span class="n">dims</span> <span class="o">=</span> <span class="n">dims</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
398+
399+
<span class="n">result</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dims</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="s1">&#39;F&#39;</span><span class="p">)</span>
400+
396401
<span class="k">return</span> <span class="n">result</span>
397402

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<span class="k">else</span><span class="p">:</span> <span class="c1"># scalar var</span>

docs/_modules/cmdstanpy/stanfit/runset.html

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<title>cmdstanpy.stanfit.runset &#8212; CmdStanPy 1.0.6 documentation</title>
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<title>cmdstanpy.stanfit.runset &#8212; CmdStanPy 1.0.7 documentation</title>
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<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.0.6</a>
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<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.0.7</a>
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