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feat(plots): plot inferred time-clonal fate potency correlation #647

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feat(plots): plot inferred time-clonal fate potency correlation #647

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@cameronraysmith cameronraysmith commented Aug 23, 2024 •
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@cameronraysmith cameronraysmith added the skip-ci Skip CI workflow label Aug 23, 2024
@cameronraysmith cameronraysmith self-assigned this Aug 23, 2024
@cameronraysmith cameronraysmith added this to the 0.4.x milestone Aug 23, 2024
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow enhancement New feature or request python Pull requests that update Python code and removed skip-ci Skip CI workflow labels Aug 23, 2024
@cameronraysmith cameronraysmith linked an issue Aug 24, 2024 that may be closed by this pull request
add plots module for cell fate metrics comparison #621
Open
@cameronraysmith
refactor(tasks): move load data function to utils
0adac20 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(utils): add function to compute file hashes
7ede4bc 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): type-check get clone trajectory function
7f438b3 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): use pandas regex str replacement in lineage fate correlation
34cfd15 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
refactor(plots): archive unused code from get clone trajectory
b7eadc4 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(styles): add module for explicit specification of colors
7622639 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): parameterize posterior time color map
155a131 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
nit(plots): update comments
81c5edf 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): include time and angle uncertainty
f45f308 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(tasks): draft time fate correlation task
d07e961 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): disable transparency in lineage fate correlation
ff63d31 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(workflows): add demo flag
7a55e69 
automatically set all flags to demo mode

Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): make posterior time titles and colorbar optional
f3cf7aa 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): reorder angle uncertainty of lineage fate correlation
7683f2e 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(tasks): map time fate correlation over all data set configurations
3e301b7 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): allow scaled measures as well as vector fields
4f5d517 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(styles): enable unicode in latex
febd9a8 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(styles): add function to set matplotlib style globally
e682a63 
- check if latex is in path
- TODO: the latex distribution requires standard packages that may only be able to be checked via tlmgr

Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith cameronraysmith added dev-mode Do not rebuild images and use branch name instead of git short SHA for image tags and removed skip-ci Skip CI workflow labels Mar 3, 2025
@cameronraysmith cameronraysmith removed the dev-mode Do not rebuild images and use branch name instead of git short SHA for image tags label Mar 3, 2025
@cameronraysmith
fix(rattler): pin poetry <2
f12a6ce 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow and removed execute-workflow Control workflow execution on PRs labels Mar 4, 2025
@cameronraysmith
fix(vscode): autosave on window change
17281d4 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(gitignore): add output for rattler-build
09ffa56 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(rattler): add dill
85e7da4 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(rattler): pin deps for 0.4.0b4
d29fb71 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(vscode): disable conflicting json formatting
3c7b3fe 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(yarn): init config
d9c805a 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(prettier): init ignore
97b5695 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(prettier): init config
07f68c8 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(lint): pancreas 50x13 fixture
4db0ad4 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(lint): preprocessed pancreas 50x7 fixture
6eeafbd 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(lint): trained pancreas 50x7 fixture
3877673 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(lint): postprocessed pancreas 50x7 fixture
3238bad 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(lint): preprocessed 3x4 fixture
59a7d32 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(gitignore): ignore node
5c53f51 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(taplo): make config explicit
0ca1e22 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(yarn): sync lock
8eb3f26 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(serialization): optionally load as sparse
9a3d50e 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(ensembl_batch): generalize in migration to expression
c3181f0 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(io): add tests for sparse serialization
97281f1 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(preprocess): add equivalent to generate_pancreas_fixture_data to…
9a5deb5 
… tests

Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(preprocess): use sc for umap
b615912 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(conda): sync lock
fc7eb21 
Signed-off-by: Cameron Smith <[email protected]>
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