Repositories list

• miniwdl

  Public
  Workflow Description Language developer tools & local runner

  wdlworkflow-description-language

  Python

  •

  MIT License

  •53•184•112•9•Updated Mar 13, 2025Mar 13, 2025

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •23•96•92•17•Updated Mar 13, 2025Mar 13, 2025

• single-cell-data-portal

  Public
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •15•67•267•17•Updated Mar 13, 2025Mar 13, 2025

• happy

  Public
  Happy Path Deployment Tool

  kubernetesinfrastructureterraform

  Go

  •

  MIT License

  •3•18•13•31•Updated Mar 13, 2025Mar 13, 2025

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  terraforminfrastructure-as-codeinfrastructure

  Go

  •

  MIT License

  •19•298•38•3•Updated Mar 13, 2025Mar 13, 2025

• blessclient

  Public
  Go client to negotiate SSH certificates

  czisshcertificate+ 3rsyncscpssh-agent

  Go

  •

  MIT License

  •17•64•8•4•Updated Mar 13, 2025Mar 13, 2025

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •25•66•3•6•Updated Mar 13, 2025Mar 13, 2025

• camelot

  Public
  Go

  •

  MIT License

  •0•1•0•2•Updated Mar 13, 2025Mar 13, 2025

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •26•42•42•3•Updated Mar 12, 2025Mar 12, 2025

• argo-helm-charts

  Public
  Smarty

  •0•0•0•3•Updated Mar 12, 2025Mar 12, 2025

• cryoet-data-portal-backend

  Public
  CryoET Data Portal API server & ingestion scripts

  Python

  •

  MIT License

  •2•3•7•8•Updated Mar 12, 2025Mar 12, 2025

• edu-design-system

  Public
  Design system for Education Projects

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •4•29•1•2•Updated Mar 12, 2025Mar 12, 2025

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1design-system

  TypeScript

  •

  MIT License

  •7•29•107•4•Updated Mar 12, 2025Mar 12, 2025

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •3•13•60•0•Updated Mar 12, 2025Mar 12, 2025

• go-misc

  Public
  miscellaneous go code

  Go

  •

  MIT License

  •3•7•1•1•Updated Mar 12, 2025Mar 12, 2025

• cryoet-data-portal

  Public
  CryoET Data Portal

  TypeScript

  •

  MIT License

  •13•22•264•15•Updated Mar 11, 2025Mar 11, 2025

• cryoet-data-portal-neuroglancer

  Public
  CryoET Data Portal Neuroglancer configuration helper

  Python

  •

  MIT License

  •2•1•1•6•Updated Mar 11, 2025Mar 11, 2025

• homebrew-tap

  Public
  Ruby

  •2•3•2•0•Updated Mar 11, 2025Mar 11, 2025

• argus-artifacts

  Public
  MIT License

  •0•1•0•0•Updated Mar 11, 2025Mar 11, 2025

• aws-oidc

  Public
  AWS OIDC Federation

  Go

  •

  MIT License

  •5•15•1•1•Updated Mar 10, 2025Mar 10, 2025

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •1•7•10•8•Updated Mar 10, 2025Mar 10, 2025

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •4•5•1•4•Updated Mar 7, 2025Mar 7, 2025

• czid-web

  Public
  Infectious Disease Sequencing Platform

  scienceresearchbiology+ 12sequencingcomputational-biologynext-generation-sequencingbioinformatics-pipelineglobal-healthvirologyinfectious-diseases+ 5

  TypeScript

  •

  MIT License

  •25•84•0•2•Updated Mar 3, 2025Mar 3, 2025

• create-sds-app

  Public template
  Repo template for npx create-sds-app

  TypeScript

  •

  MIT License

  •0•3•0•3•Updated Feb 25, 2025Feb 25, 2025

• czid-workflows

  Public
  Portable WDL workflows for CZ ID production pipelines

  Python

  •

  MIT License

  •7•41•4•9•Updated Feb 24, 2025Feb 24, 2025

• delta-share

  Public
  Go

  •

  MIT License

  •0•0•0•2•Updated Feb 18, 2025Feb 18, 2025

• ontology-ui

  Public
  Ontology visualizer

  ontologysingle-cellsingle-cell-rna-seq+ 1human-cell-atlas

  TypeScript

  •

  MIT License

  •0•6•47•4•Updated Feb 13, 2025Feb 13, 2025

• platformics

  Public
  Codegen Python GraphQL Entity Framework

  Python

  •

  MIT License

  •0•4•14•2•Updated Feb 11, 2025Feb 11, 2025

• czid-graphql-federation-server

  Public
  GraphQL Mesh server for CZ ID

  TypeScript

  •

  MIT License

  •0•0•0•2•Updated Feb 7, 2025Feb 7, 2025

• czid-platformics

  Public
  Python

  •

  MIT License

  •2•4•0•11•Updated Feb 7, 2025Feb 7, 2025