Commit 79387d0 1 parent 4733ef5 commit 79387d0 Copy full SHA for 79387d0
File tree 1 file changed +11
-0
lines changed
1 file changed +11
-0
lines changed Original file line number Diff line number Diff line change @@ -48,6 +48,7 @@ See [tutorial][tutorial] for more details.
48
48
- [ Why Hifiasm?] ( #why )
49
49
- [ Usage] ( #use )
50
50
- [ Assembling HiFi reads without additional data types] ( #hifionly )
51
+ - [ Assembling ONT reads] ( #ontonly )
51
52
- [ Hi-C integration] ( #hic )
52
53
- [ Trio binning] ( #trio )
53
54
- [ Ultra-long ONT integration] ( #ul )
@@ -119,6 +120,16 @@ bloom filter which takes 16GB memory at the beginning. For genomes much larger
119
120
than human, applying ` -f38 ` or even ` -f39 ` is preferred to save memory on k-mer
120
121
counting.
121
122
123
+ ### <a name =" ontonly " ></a >Assembling ONT reads
124
+
125
+ Since version 0.21.0 (r686), hifiasm can support ONT assembly using ONT simplex R10 reads.
126
+ To enable this feature, add the ` --ont ` option as shown below:
127
+ ``` sh
128
+ hifiasm -t64 --ont -o ONT.asm ONT.read.fastq.gz
129
+ ```
130
+ Please note that this module requires input reads in FASTQ format.
131
+
132
+
122
133
### <a name =" hic " ></a >Hi-C integration
123
134
124
135
Hifiasm can generate a pair of haplotype-resolved assemblies with paired-end
You can’t perform that action at this time.
0 commit comments