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Pull requests: genomic-medicine-sweden/gms_16S

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Pull requests list

Add minimal test and update modules
#45 by sofstam was closed Feb 26, 2025 Loading…
Fix some typos and formatting in README
#18 by samuell was merged May 14, 2024 Loading…
1
Porting
#21 by druvus was closed Sep 6, 2024 Loading…
Add continuous integration
#25 by samuell was merged Nov 5, 2024 Loading…
1
@samuell
2
Run test with relative paths to find error
#27 by samuell was closed Apr 16, 2025 • Draft
Add nf-core CI
#31 by samuell was closed Nov 28, 2024 • Draft
1 task
1
3
Update nf-core tools and change project name to Taco
#32 by samuell was merged Apr 15, 2025 Loading…
46
Update modules
#33 by sofstam was closed Feb 26, 2025 • Draft
1
1
26 add support for illumina
#39 by AnderssonOlivia was merged Jan 29, 2025 Loading…
1
3
Add py script that generates master html
#40 by ryanjameskennedy was closed Feb 3, 2025 • Draft
1
Testing
#41 by fwa93 was merged Feb 3, 2025 Loading…
Add py script that generates master html
#42 by ryanjameskennedy was closed Feb 4, 2025 Loading…
added link
#1 by fwa93 was merged Feb 23, 2023 Loading…
Master html creation with timestamps
#43 by ryanjameskennedy was merged Feb 18, 2025 Loading…
1
11
Allow for custom barcodes
#46 by mhkc was closed Feb 26, 2025 Loading…
Allow custom barcodes
#48 by mhkc was merged Feb 27, 2025 Loading…
1
11
Adjust GHA settings to run on every push
#49 by samuell was merged Mar 4, 2025 Loading…
Emit qc files and add stubs
#50 by ryanjameskennedy was merged Mar 6, 2025 Loading…
4
Fix dependencies for merge barcodes samplesheet
#52 by ryanjameskennedy was merged Mar 7, 2025 Loading…
1
2
Merge dev branch into main
#53 by ryanjameskennedy was merged Mar 13, 2025 Loading…
5
Fix dockerfile context
#54 by ryanjameskennedy was merged Mar 10, 2025 Loading…
1
Updates to dev before merge
#55 by ryanjameskennedy was merged Mar 12, 2025 Loading…
1
Conditionally emit nanostats_unprocessed
#58 by AnderssonOlivia was merged Mar 17, 2025 Loading…
3
Add prefix to master html
#59 by ryanjameskennedy was merged Mar 17, 2025 Loading…
1
Visualise changes: Update to nf-core template 3.2.1
#84 by samuell was closed May 27, 2025 • Draft
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