test2.bed

1	43394886	43394887	289839	0.98	G	A	PASS	AC=172;AN=294;SF=0,1;OMIM=606777;modeOfInheritance=Dominant;CVStatus=Have the Disease	GT:RR:DP:GQ:VR	1/1:0:74:.:74
1	98348884	98348885	435	0.99	G	A	PASS	AC=2437;AN=2922;SF=0,1;OMIM=274270;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:184:.:184
1	156848967	156848968	21306	0.96	C	T	PASS	AC=92;AN=162;SF=0,1;OMIM=256800;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:44:96:.:52
1	169519048	169519049	0.99	T	C	PASS	AC=3103;AN=3118;SF=0,1;didaGeneID=F5;didaDiseaseName=Familial exudative vitreoretinopathy;GeneA=FZD4;GeneB=F5	GT:RR:DP:GQ:VR	1/1:0:223:.:223
10	121436361	121436362	471799	0.98	A	G	PASS	AC=2125;AN=2738;SF=0,1;OMIM=613881;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:161:287:.:126
11	193862	193863	.	0.99	T	C	PASS	AC=1390;AN=2138;SF=0,1;Gwas_DISEASE=Mean_platelet_volume;GwasContext=synonymous_variant	GT:RR:DP:GQ:VR	0/1:45:131:.:86
11	308313	308314	.	0.95	T	C	PASS	AC=955;AN=1240;SF=0,1;Gwas_DISEASE=Granulocyte_count;GwasContext=missense_variant	GT:RR:DP:GQ:VR	1/1:0:312:.:312
11	308313	308314	.	0.95	T	C	PASS	AC=955;AN=1240;SF=0,1;Gwas_DISEASE=Lymphocyte_percentage_of_white_cells;GwasContext=missense_variant	GT:RR:DP:GQ:VR	1/1:0:312:.:312
11	308313	308314	.	0.95	T	C	PASS	AC=955;AN=1240;SF=0,1;Gwas_DISEASE=Myeloid_white_cell_count;GwasContext=missense_variant	GT:RR:DP:GQ:VR	1/1:0:312:.:312
11	308313	308314	.	0.95	T	C	PASS	AC=955;AN=1240;SF=0,1;Gwas_DISEASE=Neutrophil_count;GwasContext=missense_variant	GT:RR:DP:GQ:VR	1/1:0:312:.:312
11	308313	308314	.	0.95	T	C	PASS	AC=955;AN=1240;SF=0,1;Gwas_DISEASE=Sum_basophil_neutrophil_counts;GwasContext=missense_variant	GT:RR:DP:GQ:VR	1/1:0:312:.:312
11	308313	308314	.	0.95	T	C	PASS	AC=955;AN=1240;SF=0,1;Gwas_DISEASE=Sum_neutrophil_eosinophil_counts;GwasContext=missense_variant	GT:RR:DP:GQ:VR	1/1:0:312:.:312
11	614317	614318	.	0.95	T	C	PASS	AC=559;AN=874;SF=0,1;Gwas_DISEASE=Systemic_lupus_erythematosus;GwasContext=missense_variant	GT:RR:DP:GQ:VR	1/1:0:20:.:20
11	18327683	18327684	427878	0.99	G	T	PASS	AC=2533;AN=2958;SF=0,1;OMIM=614074;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:237:.:237
11	89017960	89017961	0.97	G	A	PASS	AC=327;AN=602;SF=0,1;didaGeneID=TYR;didaDiseaseName=Ocular albinism with congenital sensorineural deafness;GeneA=MITF;GeneB=TYR	GT:RR:DP:GQ:VR	0/1:148:296:.:148
11	89017960	89017961	0.97	G	A	PASS	AC=327;AN=602;SF=0,1;didaGeneID=TYR;didaDiseaseName=Oculocutaneous albinism;GeneA=TYR;GeneB=OCA2	GT:RR:DP:GQ:VR	0/1:148:296:.:148
11	89017960	89017961	0.97	G	A	PASS	AC=327;AN=602;SF=0,1;didaGeneID=TYR;didaDiseaseName=Oculocutaneous albinism;GeneA=TYR;GeneB=SLC45A2	GT:RR:DP:GQ:VR	0/1:148:296:.:148
11	117869669	117869670	0.96	A	G	PASS	AC=2474;AN=2838;SF=0,1;didaGeneID=IL10RA;didaDiseaseName=Autosomal recessive early-onset inflammatory bowel disease;GeneA=NOD2;GeneB=IL10RA	GT:RR:DP:GQ:VR	1/1:0:178:.:178
13	23909141	23909142	371179	0.99	T	C	PASS	AC=42;AN=72;SF=0,1;OMIM=270550;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:248:471:.:223
13	77574982	77574983	2571	0.96	A	G	PASS	AC=726;AN=1166;SF=0,1;OMIM=256731;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:1:337:.:336
13	77574982	77574983	56529	0.96	A	G	PASS	AC=726;AN=1166;SF=0,1;OMIM=256731;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:1:337:.:336
13	103527929	103527930	208576	0.99	G	C	PASS	AC=3122;AN=3124;SF=0,1;OMIM=278780;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:463:.:463
15	42680057	42680058	166786	0.98	T	C	PASS	AC=117;AN=210;SF=0,1;OMIM=253600;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:248:.:248
16	16271356	16271357	433283	0.99	T	C	PASS	AC=3068;AN=3118;SF=0,1;OMIM=264800;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:219:.:219
16	16271408	16271409	433280	0.99	G	A	PASS	AC=468;AN=862;SF=0,1;OMIM=264800;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:98:198:.:100
16	16278862	16278863	433247	0.98	G	T	PASS	AC=1096;AN=1754;SF=0,1;OMIM=264800;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:113:.:113
16	16278862	16278863	433447	0.98	G	T	PASS	AC=1096;AN=1754;SF=0,1;OMIM=264800;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:113:.:113
16	16278868	16278869	433246	0.97	G	C	PASS	AC=1092;AN=1746;SF=0,1;OMIM=264800;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:98:.:98
16	16281006	16281007	433244	0.97	A	G	PASS	AC=1126;AN=1784;SF=0,1;OMIM=264800;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:62:.:62
16	56548500	56548501	0.99	C	T	PASS	AC=3112;AN=3124;SF=0,1;didaGeneID=BBS2;didaDiseaseName=Bardet-Biedl syndrome;GeneA=BBS2;GeneB=MKKS	GT:RR:DP:GQ:VR	1/1:0:299:.:299
17	3397701	3397702	2609	0.99	C	T	PASS	AC=604;AN=1048;SF=0,1;OMIM=271900;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:440:843:.:403
17	3397701	3397702	370207	0.99	C	T	PASS	AC=604;AN=1048;SF=0,1;OMIM=271900;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:440:843:.:403
17	29553484	29553485	217068	0.98	G	A	PASS	AC=1471;AN=2160;SF=0,1;OMIM=162200;modeOfInheritance=Dominant;CVStatus=Have the Disease	GT:RR:DP:GQ:VR	1/1:0:251:.:251
17	29553484	29553485	217069	0.98	G	A	PASS	AC=1471;AN=2160;SF=0,1;OMIM=162200;modeOfInheritance=Dominant;CVStatus=Have the Disease	GT:RR:DP:GQ:VR	1/1:0:251:.:251
17	29553484	29553485	423262	0.98	G	A	PASS	AC=1471;AN=2160;SF=0,1;OMIM=162200;modeOfInheritance=Dominant;CVStatus=Have the Disease	GT:RR:DP:GQ:VR	1/1:0:251:.:251
17	41223093	41223094	180697	0.97	T	C	PASS	AC=1074;AN=1732;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:225:421:.:196
17	41223093	41223094	267559	0.97	T	C	PASS	AC=1074;AN=1732;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:225:421:.:196
17	41223093	41223094	55299	0.97	T	C	PASS	AC=1074;AN=1732;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:225:421:.:196
17	41234469	41234470	267529	0.99	A	G	PASS	AC=1021;AN=1644;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:149:308:.:159
17	41234469	41234470	267531	0.99	A	G	PASS	AC=1021;AN=1644;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:149:308:.:159
17	41243999	41244000	125636	0.99	T	C	PASS	AC=1066;AN=1722;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:171:323:.:152
17	41243999	41244000	254433	0.99	T	C	PASS	AC=1066;AN=1722;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:171:323:.:152
17	41244434	41244435	54770	0.98	T	C	PASS	AC=1020;AN=1642;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:284:561:.:277
17	41244935	41244936	54617	0.99	G	A	PASS	AC=1476;AN=2108;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:267:560:.:293
17	41244935	41244936	54620	0.99	G	A	PASS	AC=1476;AN=2108;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:267:560:.:293
17	41245236	41245237	266245	0.99	A	G	PASS	AC=1019;AN=1644;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:373:741:.:368
17	41245236	41245237	54523	0.99	A	G	PASS	AC=1019;AN=1644;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:373:741:.:368
17	41245470	41245471	266212	0.98	C	T	PASS	AC=118;AN=224;SF=0,1;OMIM=604370;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:185:400:.:215
17	42985442	42985443	16169	1.0	G	T	PASS	AC=1;AN=2;SF=0;OMIM=203450;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:182:345:.:163
17	78184476	78184477	287037	0.99	C	T	PASS	AC=4;AN=8;SF=0,1;OMIM=252900;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:58:99:.:41
19	1221292	1221293	458065	0.99	C	T	PASS	AC=45;AN=86;SF=0,1;OMIM=175200;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:21:43:.:22
19	11224264	11224265	440640	0.98	A	G	PASS	AC=1994;AN=2686;SF=0,1;OMIM=143890;modeOfInheritance=Dominant;CVStatus=Have the Disease	GT:RR:DP:GQ:VR	1/1:0:123:.:123
19	11227601	11227602	252025	0.97	C	T	PASS	AC=922;AN=1494;SF=0,1;OMIM=143890;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:226:433:.:207
19	11227601	11227602	252026	0.97	C	T	PASS	AC=922;AN=1494;SF=0,1;OMIM=143890;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:226:433:.:207
19	11227601	11227602	375823	0.97	C	T	PASS	AC=922;AN=1494;SF=0,1;OMIM=143890;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:226:433:.:207
19	11227601	11227602	440660	0.97	C	T	PASS	AC=922;AN=1494;SF=0,1;OMIM=143890;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:226:433:.:207
19	11233940	11233941	440683	0.98	A	G	PASS	AC=2503;AN=2966;SF=0,1;OMIM=143890;modeOfInheritance=Dominant;CVStatus=Have the Disease	GT:RR:DP:GQ:VR	1/1:0:159:.:159
2	26699125	26699126	65792	0.96	C	G	PASS	AC=1798;AN=2166;SF=0,1;OMIM=601071;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:34:.:34
2	136590745	136590746	56393	0.99	C	A	PASS	AC=1029,1;AN=1678;SF=0,1;OMIM=223000;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:378:.:378
2	136590745	136590746	56393	0.99	C	T	PASS	AC=1029,1;AN=1678;SF=0,1;OMIM=223000;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:378:.:378
2	219677300	219677301	498394	0.99	C	T	PASS	AC=17;AN=30;SF=0,1;OMIM=213700;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:386:743:.:357
2	241814549	241814550	204196	0.99	G	A	PASS	AC=30;AN=60;SF=0,1;OMIM=259900;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:67:155:.:88
20	3214818	3214819	1312	0.98	T	G	PASS	AC=1504;AN=2262;SF=0,1;OMIM=217400;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:130:.:130
20	3214818	3214819	208613	0.98	T	G	PASS	AC=1504;AN=2262;SF=0,1;OMIM=217700;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:130:.:130
21	47545767	47545768	266110	0.98	G	A	PASS	AC=1370;AN=2040;SF=0,1;OMIM=254090;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:65:121:.:56
22	38369975	38369976	7404	0.97	A	G	PASS	AC=2131;AN=2716;SF=0,1;OMIM=613266;modeOfInheritance=Dominant;CVStatus=Have the Disease	GT:RR:DP:GQ:VR	1/1:0:168:.:168
3	8775660	8775661	8289	0.98	C	T	PASS	AC=1113;AN=1800;SF=0,1;OMIM=614321;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:42:72:.:30
3	122003831	122003832	8339	0.99	G	C	PASS	AC=2918;AN=3100;SF=0,1;OMIM=601198;modeOfInheritance=Dominant;CVStatus=Have the Disease	GT:RR:DP:GQ:VR	1/1:0:182:.:182
4	55141054	55141055	13549	0.99	A	G	PASS	AC=3024;AN=3108;SF=0,1;OMIM=606764;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:153:287:.:134
4	187158033	187158034	12037	0.95	G	A	PASS	AC=1895;AN=2538;SF=0,1;OMIM=612423;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:106:218:.:112
5	228361	228362	472291	0.99	T	C	PASS	AC=618;AN=1008;SF=0,1;OMIM=614165;modeOfInheritance=Dominant;CVStatus=None	GT:RR:DP:GQ:VR	0/1:116:227:.:111
5	33954510	33954511	4500	0.98	T	C	PASS	AC=2758;AN=3062;SF=0,1;OMIM=606574;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:117:.:117
5	77425027	77425028	224761	0.99	A	T	PASS	AC=2476;AN=2842;SF=0,1;OMIM=608233;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:223:.:223
6	152527319	152527320	436905	0.97	G	C	PASS	AC=5;AN=10;SF=0,1;OMIM=610743;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:77:133:.:56
7	150648197	150648198	200761	0.98	A	G	PASS	AC=2260;AN=2668;SF=0,1;OMIM=115000;modeOfInheritance=Dominant;CVStatus=Have the Disease	GT:RR:DP:GQ:VR	1/1:0:57:.:57
8	87679302	87679303	427652	0.99	A	C	PASS	AC=2935;AN=3104;SF=0,1;OMIM=262300;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:193:.:193
8	87679302	87679303	427684	0.99	A	C	PASS	AC=2935;AN=3104;SF=0,1;OMIM=262300;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	1/1:0:193:.:193
8	100883798	100883799	56640	1.0	G	C	PASS	AC=6;AN=12;SF=0;OMIM=216550;modeOfInheritance=Recessive;CVStatus=Carrier of the Disease	GT:RR:DP:GQ:VR	0/1:237:450:.:213
9	6253570	6253571	.	0.99	C	T	PASS	AC=1244;AN=1938;SF=0,1;Gwas_DISEASE=Endometriosis;GwasContext=synonymous_variant	GT:RR:DP:GQ:VR	0/1:91:168:.:77
9	7174672	7174673	.	0.98	G	A	PASS	AC=1009;AN=1628;SF=0,1;Gwas_DISEASE=Menarche_(age_at_onset);GwasContext=missense_variant	GT:RR:DP:GQ:VR	0/1:255:507:.:252