Skip to content

Commit 88826a8

Browse files
haowang-bioinfohaowang-bioinfo
committed
fix: change compartment abbreviation p -> x
- Change compartment from p to x, this is to sync with the change made in Human-GEM PR341
1 parent 8a8961b commit 88826a8

File tree

2 files changed

+9
-9
lines changed

2 files changed

+9
-9
lines changed

‎data/mouseSpecificMets.tsv

+4-4
Original file line numberDiff line numberDiff line change
@@ -3,9 +3,9 @@ mets metNames metFormulas metCharges compartments metKEGGID metPubChemID metChEB
33
"MAM20002g" "alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine" "C20H35NO16" 0 "g" "C04847" "7404" "CHEBI:18217;CHEBI:62327" "ALPHA-D-GALACTOSYL-13-BETA-D-GALACTOS" "MNXM735633" "MAM20002"
44
"MAM20003c" "L-Allothreonine" "C4H9NO3" 0 "c" "C05519" "7864" "CHEBI:58585" "L-ALLO-THREONINE" "MNXM2125" "MAM20003"
55
"MAM20004c" "Benzenamine sulfate" "C6H6NO3S" -1 "c" "C06011" "440879" "CHEBI:3024" "BENZENAMINE-SULFATE" "MNXM8327" "MAM20004"
6-
"MAM20005p" "1,3,7-Trimethyluric acid" "C8H10N4O3" 0 "p" "C16361" "47205669" "CHEBI:691622" "CPD-12480" "MNXM2761" "MAM20005"
7-
"MAM20006p" "3,6,8-Trimethylallantoin" "C7H12N4O3" 0 "p" "C16362" "47205670" "CHEBI:80471" "CPD-12485" "MNXM6778" "MAM20006"
6+
"MAM20005x" "1,3,7-Trimethyluric acid" "C8H10N4O3" 0 "x" "C16361" "47205669" "CHEBI:691622" "CPD-12480" "MNXM2761" "MAM20005"
7+
"MAM20006x" "3,6,8-Trimethylallantoin" "C7H12N4O3" 0 "x" "C16362" "47205670" "CHEBI:80471" "CPD-12485" "MNXM6778" "MAM20006"
88
"MAM20007r" "L-xylo-Hexulonolactone" "C6H8O6" 0 "r" "C03289" "6146" "CHEBI:73681" "" "MNXM731654" "MAM20007"
99
"MAM01368r" "ascorbate" "C6H7O6" -1 "r" "C00072" "" "CHEBI:38290" "ASCORBATE" "MNXM727871" "MAM01368"
10-
"MAM01104p" "5-hydroxyisourate" "C5H4N4O4" 0 "p" "C11821" "" "CHEBI:250388" "5-HYDROXYISOURATE" "MNXM1137" "MAM01104"
11-
"MAM10018p" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" "C5H5N4O5" -1 "p" "C12248" "" "CHEBI:58639" "CPD-5821" "MNXM1805" "MAM10018"
10+
"MAM01104x" "5-hydroxyisourate" "C5H4N4O4" 0 "x" "C11821" "" "CHEBI:250388" "5-HYDROXYISOURATE" "MNXM1137" "MAM01104"
11+
"MAM10018x" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" "C5H5N4O5" -1 "x" "C12248" "" "CHEBI:58639" "CPD-5821" "MNXM1805" "MAM10018"

‎data/mouseSpecificRxns.tsv

+5-5
Original file line numberDiff line numberDiff line change
@@ -2,11 +2,11 @@ rxns equations ub lb eccodes subSystems grRules rxnReferences rxnConfidenceScore
22
"MAR20001" "NAD+[m] + threonine[m] => NADH[m] + H+[m] + L-2-amino-3-oxobutanoic acid[m]" 1000 0 "1.1.1.103" "Glycine, serine and threonine metabolism" "Tdh" "PMID:26492815" 4 "R01465" "THREODEHYD-RXN" "R-HSA-6798667" "MNXR103402"
33
"MAR20002" "N-Acetyllactosamine[g] + UDP-galactose[g] => alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine[g] + UDP[g] + H+[g]" 1000 0 "2.4.1.87" "Glycosphingolipid biosynthesis" "Ggta1" "" 2 "R04531" "2.4.1.124-RXN" "" "MNXR115091"
44
"MAR20003" "L-Allothreonine[c] <=> glycine[c] + acetaldehyde[c]" 1000 -1000 "4.1.2.48;4.1.2.49" "Glycine, serine and threonine metabolism" "Tha1" "" 2 "R06171" "LTAA-RXN" "" "MNXR104834"
5-
"MAR20004" "H2O[p] + 5-hydroxyisourate[p] => 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[p] + H+[p]" 1000 0 "3.5.2.17" "Purine metabolism" "Urah" "PMID:17085964" 4 "R06601" "3.5.2.17-RXN" "" "MNXR100652"
6-
"MAR20005" "5-hydroxyisourate[p] <=> 5-hydroxyisourate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
7-
"MAR20006" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[p] <=> 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
8-
"MAR20007" "2 H2O[p] + O2[p] + 1,3,7-Trimethyluric acid[p] <=> CO2[p] + H2O2[p] + 3,6,8-Trimethylallantoin[p]" 1000 -1000 "1.7.3.3" "Caffeine metabolism" "Uox" "" 2 "R07981" "" "" "MNXR111564"
5+
"MAR20004" "H2O[x] + 5-hydroxyisourate[x] => 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[x] + H+[x]" 1000 0 "3.5.2.17" "Purine metabolism" "Urah" "PMID:17085964" 4 "R06601" "3.5.2.17-RXN" "" "MNXR100652"
6+
"MAR20005" "5-hydroxyisourate[x] <=> 5-hydroxyisourate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
7+
"MAR20006" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[x] <=> 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
8+
"MAR20007" "2 H2O[x] + O2[x] + 1,3,7-Trimethyluric acid[x] <=> CO2[x] + H2O2[x] + 3,6,8-Trimethylallantoin[x]" 1000 -1000 "1.7.3.3" "Caffeine metabolism" "Uox" "" 2 "R07981" "" "" "MNXR111564"
99
"MAR20008" "O2[r] + L-gulono-1,4-lactone[r] => H2O2[r] + ascorbate[r] + H+[r]" 1000 0 "1.1.3.8" "Ascorbate and aldarate metabolism" "Gulo" "PMID:14962674" 4 "R10053" "RXN-13689" "" "MNXR116004"
1010
"MAR20009" "O2[r] + L-gulono-1,4-lactone[r] => H2O2[r] + L-xylo-Hexulonolactone[r]" 1000 0 "1.1.3.8" "Ascorbate and aldarate metabolism" "Gulo" "" 2 "R03184" "L-GULONOLACTONE-OXIDASE-RXN" "" "MNXR140097"
1111
"MAR20010" "PAPS[c] + aniline[c] => PAP[c] + Benzenamine sulfate[c] + H+[c]" 1000 0 "2.8.2.3" "Amine sulfotransferase" "Sult3a1" "" 2 "R01861" "" "" "MNXR107208"
12-
"MAR20016" "ascorbate[r] => ascorbate[c]" 1000 0 "" "Transport" "" "" 0 "" "" "" ""
12+
"MAR20016" "ascorbate[r] => ascorbate[c]" 1000 0 "" "Transport" "" "" 0 "" "" "" ""

0 commit comments

Comments
 (0)