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style: implement MA met and rxn ids
- This is to in line with Human-GEM v1.8
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‎data/mouseSpecificMets.tsv

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mets metNames metFormulas metCharges compartments metKEGGID metPubChemID metChEBIID metMetaCycID metMetaNetXID
2-
"MA-M20001g" "N-Acetyllactosamine" "C14H25NO11" 0 "g" "C00611" "3885" "CHEBI:16153" "BETA-D-GALACTOSYL-ETCETERA-GLUCOSAMINE" "MNXM729847"
3-
"MA-M20002g" "alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine" "C20H35NO16" 0 "g" "C04847" "7404" "CHEBI:18217;CHEBI:62327" "ALPHA-D-GALACTOSYL-13-BETA-D-GALACTOS" "MNXM735633"
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"MA-M20003c" "L-Allothreonine" "C4H9NO3" 0 "c" "C05519" "7864" "CHEBI:58585" "L-ALLO-THREONINE" "MNXM2125"
5-
"MA-M20004c" "Benzenamine sulfate" "C6H6NO3S" -1 "c" "C06011" "440879" "CHEBI:3024" "BENZENAMINE-SULFATE" "MNXM8327"
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"MA-M20005p" "1,3,7-Trimethyluric acid" "C8H10N4O3" 0 "p" "C16361" "47205669" "CHEBI:691622" "CPD-12480" "MNXM2761"
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"MA-M20006p" "3,6,8-Trimethylallantoin" "C7H12N4O3" 0 "p" "C16362" "47205670" "CHEBI:80471" "CPD-12485" "MNXM6778"
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"MA-M20007r" "L-xylo-Hexulonolactone" "C6H8O6" 0 "r" "C03289" "6146" "CHEBI:73681" "" "MNXM731654"
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"MA-M01368r" "ascorbate" "C6H7O6" -1 "r" "C00072" "" "CHEBI:38290" "ASCORBATE" "MNXM727871"
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"MA-M01104p" "5-hydroxyisourate" "C5H4N4O4" 0 "p" "C11821" "" "CHEBI:250388" "5-HYDROXYISOURATE" "MNXM1137"
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"MA-M10018p" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" "C5H5N4O5" -1 "p" "C12248" "" "CHEBI:58639" "CPD-5821" "MNXM1805"
2+
"MAM20001g" "N-Acetyllactosamine" "C14H25NO11" 0 "g" "C00611" "3885" "CHEBI:16153" "BETA-D-GALACTOSYL-ETCETERA-GLUCOSAMINE" "MNXM729847"
3+
"MAM20002g" "alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine" "C20H35NO16" 0 "g" "C04847" "7404" "CHEBI:18217;CHEBI:62327" "ALPHA-D-GALACTOSYL-13-BETA-D-GALACTOS" "MNXM735633"
4+
"MAM20003c" "L-Allothreonine" "C4H9NO3" 0 "c" "C05519" "7864" "CHEBI:58585" "L-ALLO-THREONINE" "MNXM2125"
5+
"MAM20004c" "Benzenamine sulfate" "C6H6NO3S" -1 "c" "C06011" "440879" "CHEBI:3024" "BENZENAMINE-SULFATE" "MNXM8327"
6+
"MAM20005p" "1,3,7-Trimethyluric acid" "C8H10N4O3" 0 "p" "C16361" "47205669" "CHEBI:691622" "CPD-12480" "MNXM2761"
7+
"MAM20006p" "3,6,8-Trimethylallantoin" "C7H12N4O3" 0 "p" "C16362" "47205670" "CHEBI:80471" "CPD-12485" "MNXM6778"
8+
"MAM20007r" "L-xylo-Hexulonolactone" "C6H8O6" 0 "r" "C03289" "6146" "CHEBI:73681" "" "MNXM731654"
9+
"MAM01368r" "ascorbate" "C6H7O6" -1 "r" "C00072" "" "CHEBI:38290" "ASCORBATE" "MNXM727871"
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"MAM01104p" "5-hydroxyisourate" "C5H4N4O4" 0 "p" "C11821" "" "CHEBI:250388" "5-HYDROXYISOURATE" "MNXM1137"
11+
"MAM10018p" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" "C5H5N4O5" -1 "p" "C12248" "" "CHEBI:58639" "CPD-5821" "MNXM1805"

‎data/mouseSpecificRxns.tsv

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rxns equations ub lb eccodes subSystems grRules rxnReferences rxnConfidenceScores rxnKEGGID rxnMetaCycID rxnREACTOMEID rxnMetaNetXID
2-
"MA-R20001" "NAD+[m] + threonine[m] => NADH[m] + H+[m] + L-2-amino-3-oxobutanoic acid[m]" 1000 0 "1.1.1.103" "Glycine, serine and threonine metabolism" "Tdh" "PMID:26492815" 4 "R01465" "THREODEHYD-RXN" "R-HSA-6798667" "MNXR103402"
3-
"MA-R20002" "N-Acetyllactosamine[g] + UDP-galactose[g] => alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine[g] + UDP[g] + H+[g]" 1000 0 "2.4.1.87" "Glycosphingolipid biosynthesis" "Ggta1" "" 2 "R04531" "2.4.1.124-RXN" "" "MNXR115091"
4-
"MA-R20003" "L-Allothreonine[c] <=> glycine[c] + acetaldehyde[c]" 1000 -1000 "4.1.2.48;4.1.2.49" "Glycine, serine and threonine metabolism" "Tha1" "" 2 "R06171" "LTAA-RXN" "" "MNXR104834"
5-
"MA-R20004" "H2O[p] + 5-hydroxyisourate[p] => 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[p] + H+[p]" 1000 0 "3.5.2.17" "Purine metabolism" "Urah" "PMID:17085964" 4 "R06601" "3.5.2.17-RXN" "" "MNXR100652"
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"MA-R20005" "5-hydroxyisourate[p] <=> 5-hydroxyisourate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
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"MA-R20006" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[p] <=> 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
8-
"MA-R20007" "2 H2O[p] + O2[p] + 1,3,7-Trimethyluric acid[p] <=> CO2[p] + H2O2[p] + 3,6,8-Trimethylallantoin[p]" 1000 -1000 "1.7.3.3" "Caffeine metabolism" "Uox" "" 2 "R07981" "" "" "MNXR111564"
9-
"MA-R20008" "O2[r] + L-gulono-1,4-lactone[r] => H2O2[r] + ascorbate[r] + H+[r]" 1000 0 "1.1.3.8" "Ascorbate and aldarate metabolism" "Gulo" "PMID:14962674" 4 "R10053" "RXN-13689" "" "MNXR116004"
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"MA-R20009" "O2[r] + L-gulono-1,4-lactone[r] => H2O2[r] + L-xylo-Hexulonolactone[r]" 1000 0 "1.1.3.8" "Ascorbate and aldarate metabolism" "Gulo" "" 2 "R03184" "L-GULONOLACTONE-OXIDASE-RXN" "" "MNXR140097"
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"MA-R20010" "PAPS[c] + aniline[c] => PAP[c] + Benzenamine sulfate[c] + H+[c]" 1000 0 "2.8.2.3" "Amine sulfotransferase" "Sult3a1" "" 2 "R01861" "" "" "MNXR107208"
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"MA-R20016" "ascorbate[r] => ascorbate[c]" 1000 0 "" "Transport" "" "" 0 "" "" "" ""
2+
"MAR20001" "NAD+[m] + threonine[m] => NADH[m] + H+[m] + L-2-amino-3-oxobutanoic acid[m]" 1000 0 "1.1.1.103" "Glycine, serine and threonine metabolism" "Tdh" "PMID:26492815" 4 "R01465" "THREODEHYD-RXN" "R-HSA-6798667" "MNXR103402"
3+
"MAR20002" "N-Acetyllactosamine[g] + UDP-galactose[g] => alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine[g] + UDP[g] + H+[g]" 1000 0 "2.4.1.87" "Glycosphingolipid biosynthesis" "Ggta1" "" 2 "R04531" "2.4.1.124-RXN" "" "MNXR115091"
4+
"MAR20003" "L-Allothreonine[c] <=> glycine[c] + acetaldehyde[c]" 1000 -1000 "4.1.2.48;4.1.2.49" "Glycine, serine and threonine metabolism" "Tha1" "" 2 "R06171" "LTAA-RXN" "" "MNXR104834"
5+
"MAR20004" "H2O[p] + 5-hydroxyisourate[p] => 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[p] + H+[p]" 1000 0 "3.5.2.17" "Purine metabolism" "Urah" "PMID:17085964" 4 "R06601" "3.5.2.17-RXN" "" "MNXR100652"
6+
"MAR20005" "5-hydroxyisourate[p] <=> 5-hydroxyisourate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
7+
"MAR20006" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[p] <=> 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
8+
"MAR20007" "2 H2O[p] + O2[p] + 1,3,7-Trimethyluric acid[p] <=> CO2[p] + H2O2[p] + 3,6,8-Trimethylallantoin[p]" 1000 -1000 "1.7.3.3" "Caffeine metabolism" "Uox" "" 2 "R07981" "" "" "MNXR111564"
9+
"MAR20008" "O2[r] + L-gulono-1,4-lactone[r] => H2O2[r] + ascorbate[r] + H+[r]" 1000 0 "1.1.3.8" "Ascorbate and aldarate metabolism" "Gulo" "PMID:14962674" 4 "R10053" "RXN-13689" "" "MNXR116004"
10+
"MAR20009" "O2[r] + L-gulono-1,4-lactone[r] => H2O2[r] + L-xylo-Hexulonolactone[r]" 1000 0 "1.1.3.8" "Ascorbate and aldarate metabolism" "Gulo" "" 2 "R03184" "L-GULONOLACTONE-OXIDASE-RXN" "" "MNXR140097"
11+
"MAR20010" "PAPS[c] + aniline[c] => PAP[c] + Benzenamine sulfate[c] + H+[c]" 1000 0 "2.8.2.3" "Amine sulfotransferase" "Sult3a1" "" 2 "R01861" "" "" "MNXR107208"
12+
"MAR20016" "ascorbate[r] => ascorbate[c]" 1000 0 "" "Transport" "" "" 0 "" "" "" ""

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