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Try replacing dict with list #16

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ArtPoon opened this issue Apr 20, 2020 · 0 comments
Open

Try replacing dict with list #16

ArtPoon opened this issue Apr 20, 2020 · 0 comments

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@ArtPoon
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ArtPoon commented Apr 20, 2020

Script slows down over time - it might be due to constantly updating the frequency table as a dict object. We should be able to pre-allocate a list given the length of the reference sequence (using info in SAM header). Implement and evaluate processing times on the same data.
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@ArtPoon