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graphplot stackoverflow #34

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anandijain opened this issue Sep 30, 2021 · 3 comments
Closed

graphplot stackoverflow #34

anandijain opened this issue Sep 30, 2021 · 3 comments

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@anandijain
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given the trace bottoms out at PNGFiles, it may be that the issue is better suited over there.

mwe

using LightGraphs, GLMakie, GraphMakie
g = path_graph(6)
graphplot(g)

trace

julia> graphplot(g)

signal (11): Segmentation fault: 11
in expression starting at none:0
_buffer_color_type at /Users/anand/.julia/packages/PNGFiles/yn5z5/src/io.jl:0
#_load#6 at /Users/anand/.julia/packages/PNGFiles/yn5z5/src/io.jl:148
_load##kw at /Users/anand/.julia/packages/PNGFiles/yn5z5/src/io.jl:81 [inlined]
#load#2 at /Users/anand/.julia/packages/PNGFiles/yn5z5/src/io.jl:28
load at /Users/anand/.julia/packages/PNGFiles/yn5z5/src/io.jl:23
jl_apply_generic at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
jl_f__call_latest at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
#invokelatest#2 at ./essentials.jl:716 [inlined]
invokelatest at ./essentials.jl:714 [inlined]
#load#3 at /Users/anand/.julia/packages/ImageIO/6h74I/src/ImageIO.jl:53
load at /Users/anand/.julia/packages/ImageIO/6h74I/src/ImageIO.jl:53
unknown function (ip: 0x12f296aa3)
jl_apply_generic at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
jl_f__call_latest at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
#invokelatest#2 at ./essentials.jl:716 [inlined]
invokelatest at ./essentials.jl:714 [inlined]
#action#33 at /Users/anand/.julia/packages/FileIO/DNKwN/src/loadsave.jl:219
action at /Users/anand/.julia/packages/FileIO/DNKwN/src/loadsave.jl:197 [inlined]
#action#32 at /Users/anand/.julia/packages/FileIO/DNKwN/src/loadsave.jl:185
action at /Users/anand/.julia/packages/FileIO/DNKwN/src/loadsave.jl:185 [inlined]
#load#14 at /Users/anand/.julia/packages/FileIO/DNKwN/src/loadsave.jl:113
load at /Users/anand/.julia/packages/FileIO/DNKwN/src/loadsave.jl:110 [inlined]
_broadcast_getindex_evalf at ./broadcast.jl:670 [inlined]
_broadcast_getindex at ./broadcast.jl:643 [inlined]
getindex at ./broadcast.jl:597 [inlined]
copy at ./broadcast.jl:943 [inlined]
materialize at ./broadcast.jl:904 [inlined]
icon at /Users/anand/.julia/packages/Makie/PFSZS/src/Makie.jl:254
unknown function (ip: 0x12f2935cb)
#Screen#48 at /Users/anand/.julia/packages/GLMakie/TViqo/src/screen.jl:346
Screen at /Users/anand/.julia/packages/GLMakie/TViqo/src/screen.jl:301 [inlined]
global_gl_screen at /Users/anand/.julia/packages/GLMakie/TViqo/src/screen.jl:247 [inlined]
global_gl_screen at /Users/anand/.julia/packages/GLMakie/TViqo/src/screen.jl:394
global_gl_screen at /Users/anand/.julia/packages/GLMakie/TViqo/src/screen.jl:393 [inlined]
backend_display at /Users/anand/.julia/packages/GLMakie/TViqo/src/display.jl:2 [inlined]
#display#903 at /Users/anand/.julia/packages/Makie/PFSZS/src/display.jl:60
display at /Users/anand/.julia/packages/Makie/PFSZS/src/display.jl:56 [inlined]
#display#902 at /Users/anand/.julia/packages/Makie/PFSZS/src/display.jl:52 [inlined]
display at /Users/anand/.julia/packages/Makie/PFSZS/src/display.jl:52 [inlined]
#display#901 at /Users/anand/.julia/packages/Makie/PFSZS/src/display.jl:51 [inlined]
display at /Users/anand/.julia/packages/Makie/PFSZS/src/display.jl:51
unknown function (ip: 0x12f28cca7)
jl_apply_generic at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
jl_f__call_latest at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
print_response at /Users/sabae/src/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:0
#45 at /Users/sabae/src/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:275
jfptr_YY.45_47516 at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/sys.dylib (unknown line)
jl_apply_generic at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
with_repl_linfo at /Users/sabae/src/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:508
jl_apply_generic at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
print_response at /Users/sabae/src/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:273
do_respond at /Users/sabae/src/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:844
unknown function (ip: 0x12f0892af)
jl_apply_generic at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
jl_f__call_latest at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
#invokelatest#2 at ./essentials.jl:716 [inlined]
invokelatest at ./essentials.jl:714 [inlined]
run_interface at /Users/sabae/src/julia/usr/share/julia/stdlib/v1.7/REPL/src/LineEdit.jl:2493
jfptr_run_interface_45833 at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/sys.dylib (unknown line)
jl_apply_generic at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
run_frontend at /Users/sabae/src/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:1230
#49 at ./task.jl:411
jfptr_YY.49_47569 at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/sys.dylib (unknown line)
jl_apply_generic at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
start_task at /Applications/Julia-1.7.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.7.dylib (unknown line)
Allocations: 163411446 (Pool: 163374169; Big: 37277); GC: 100

env info

(jl_Mcs5Kg) pkg> add GLMakie, GraphMakie, LightGraphs
  [e9467ef8] + GLMakie v0.4.6
  [1ecd5474] + GraphMakie v0.2.4
  [093fc24a] + LightGraphs v1.3.5

julia> versioninfo()
Julia Version 1.7.0-rc1
Commit 9eade6195e (2021-09-12 06:45 UTC)
Platform Info:
  OS: macOS (arm64-apple-darwin20.5.0)
  CPU: Apple M1
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-12.0.1 (ORCJIT, cyclone)
Environment:
  JULIA_NUM_THREADS = 8
@hexaeder
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hexaeder commented Sep 30, 2021 •
edited
Loading

Seems like this is a problem in Julia natively on ARM/MacOS. I can reproduce the segfault with

using Pkg; Pkg.activate(temp=true)
Pkg.add("GLMakie")
using GLMakie
plot([1,2,3])

but only in native Julia. Works fine in Julia-1.7rc1 under rosetta.

EDIT: Oh i just realized the segfault looks slightly differnet for this MWE

signal (11): Segmentation fault: 11
in expression starting at none:0
ntuple at ./ntuple.jl:0 [inlined]
uniform_name_type at /Users/hw/.julia/packages/GLMakie/TViqo/src/GLAbstraction/GLUniforms.jl:139
compile_program at /Users/hw/.julia/packages/GLMakie/TViqo/src/GLAbstraction/GLShader.jl:190
_jl_invoke at /Users/hw/bin/julia/src/gf.c:0 [inlined]
jl_apply_generic at /Users/hw/bin/julia/src/gf.c:2427
#63 at /Users/hw/.julia/packages/GLMakie/TViqo/src/GLAbstraction/GLShader.jl:247
get! at ./dict.jl:464
unknown function (ip: 0x117c71c6b)
_jl_invoke at /Users/hw/bin/julia/src/gf.c:0 [inlined]
jl_apply_generic at /Users/hw/bin/julia/src/gf.c:2427
gl_convert at /Users/hw/.julia/packages/GLMakie/TViqo/src/GLAbstraction/GLShader.jl:239
RenderObject at /Users/hw/.julia/packages/GLMakie/TViqo/src/GLAbstraction/GLTypes.jl:341
RenderObject at /Users/hw/.julia/packages/GLMakie/TViqo/src/GLAbstraction/GLTypes.jl:309 [inlined]
fxaa_postprocessor at /Users/hw/.julia/packages/GLMakie/TViqo/src/postprocessing.jl:191
#Screen#48 at /Users/hw/.julia/packages/GLMakie/TViqo/src/screen.jl:357
Screen at /Users/hw/.julia/packages/GLMakie/TViqo/src/screen.jl:301 [inlined]
global_gl_screen at /Users/hw/.julia/packages/GLMakie/TViqo/src/screen.jl:247 [inlined]
global_gl_screen at /Users/hw/.julia/packages/GLMakie/TViqo/src/screen.jl:394
global_gl_screen at /Users/hw/.julia/packages/GLMakie/TViqo/src/screen.jl:393 [inlined]
backend_display at /Users/hw/.julia/packages/GLMakie/TViqo/src/display.jl:2 [inlined]
#display#903 at /Users/hw/.julia/packages/Makie/PFSZS/src/display.jl:60
display at /Users/hw/.julia/packages/Makie/PFSZS/src/display.jl:56 [inlined]
#display#902 at /Users/hw/.julia/packages/Makie/PFSZS/src/display.jl:52 [inlined]
display at /Users/hw/.julia/packages/Makie/PFSZS/src/display.jl:52 [inlined]
#display#901 at /Users/hw/.julia/packages/Makie/PFSZS/src/display.jl:51 [inlined]
display at /Users/hw/.julia/packages/Makie/PFSZS/src/display.jl:51
unknown function (ip: 0x117c41e9f)
_jl_invoke at /Users/hw/bin/julia/src/gf.c:0 [inlined]
jl_apply_generic at /Users/hw/bin/julia/src/gf.c:2427
jl_apply at /Users/hw/bin/julia/src/./julia.h:1790 [inlined]
jl_f__call_latest at /Users/hw/bin/julia/src/builtins.c:757
print_response at /Users/hw/bin/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:0
#45 at /Users/hw/bin/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:275
jfptr_YY.45_47447 at /Users/hw/bin/julia/usr/lib/julia/sys.dylib (unknown line)
_jl_invoke at /Users/hw/bin/julia/src/gf.c:0 [inlined]
jl_apply_generic at /Users/hw/bin/julia/src/gf.c:2427
with_repl_linfo at /Users/hw/bin/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:508
_jl_invoke at /Users/hw/bin/julia/src/gf.c:0 [inlined]
jl_apply_generic at /Users/hw/bin/julia/src/gf.c:2427
print_response at /Users/hw/bin/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:273
do_respond at /Users/hw/bin/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:844
unknown function (ip: 0x117a828cf)
_jl_invoke at /Users/hw/bin/julia/src/gf.c:0 [inlined]
jl_apply_generic at /Users/hw/bin/julia/src/gf.c:2427
jl_apply at /Users/hw/bin/julia/src/./julia.h:1790 [inlined]
jl_f__call_latest at /Users/hw/bin/julia/src/builtins.c:757
#invokelatest#2 at ./essentials.jl:716 [inlined]
invokelatest at ./essentials.jl:714 [inlined]
run_interface at /Users/hw/bin/julia/usr/share/julia/stdlib/v1.7/REPL/src/LineEdit.jl:2493
jfptr_run_interface_46167 at /Users/hw/bin/julia/usr/lib/julia/sys.dylib (unknown line)
_jl_invoke at /Users/hw/bin/julia/src/gf.c:0 [inlined]
jl_apply_generic at /Users/hw/bin/julia/src/gf.c:2427
run_frontend at /Users/hw/bin/julia/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:1230
#49 at ./task.jl:411
jfptr_YY.49_47452 at /Users/hw/bin/julia/usr/lib/julia/sys.dylib (unknown line)
_jl_invoke at /Users/hw/bin/julia/src/gf.c:0 [inlined]
jl_apply_generic at /Users/hw/bin/julia/src/gf.c:2427
jl_apply at /Users/hw/bin/julia/src/./julia.h:1790 [inlined]
start_task at /Users/hw/bin/julia/src/task.c:881
Allocations: 146437108 (Pool: 146403706; Big: 33402); GC: 91

@anandijain
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The above ntuple issue is sort of well known about JuliaLang/julia#41440

I think mine may be different though, since I don't see ntuple in my trace.

@hexaeder
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fixed on Julia master

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@anandijain @hexaeder