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Nishadi De Silva
committedMay 4, 2023
Minor change to include bacterial annotation
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‎htdocs/info/genome/annotation/index.html

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@@ -12,12 +12,13 @@ <h1>Genome Annotation</h1>
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obtained via import of external data or use of predictive algorithms. This document outlines the
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steps involved in adding annotation to a <a href="/info/genome/assemblies/">genome assembly</a>:</p>
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<ol>
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<li>Import protein coding gene models. Ensembl Genomes does not carry out primary annotation
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of protein-coding gene models. Gene models can be imported either from annotation in
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<li>Import protein coding gene models. Ensembl Genomes does not usually carry out primary annotation
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of protein-coding gene models. Gene models are imported either from annotation in
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<a href="/info/genome/annotation/insdc_annotation/">INSDC</a> sequence archive records or from
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other public sources, in which case <a href="/info/genome/annotation/gff_annotation.html">GFF</a>
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is the preferred import format. In addition, Ensembl Genomes is involved in collaborations from
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which <a href="/info/genome/annotation/manual_annotation/">manual annotation</a> is imported.</li>
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which <a href="/info/genome/annotation/manual_annotation/">manual annotation</a> is imported. In 2023,
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Ensembl Bacteria released gene models generated using <a href="https://academic.oup.com/bioinformatics/article/30/14/2068/2390517">Prokka</a>.</li>
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<li>Annotate <a href="/info/genome/annotation/ncrna.html">non-coding gene models</a></li>
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<li>Annotate <a href="/info/genome/annotation/repeat_features.html">repeat features</a></li>
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<li>Annotate <a href="/info/genome/annotation/protein_features.html">protein features</a></li>

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