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htdocs/info/genome/annotation
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lines changed Original file line number Diff line number Diff line change @@ -12,12 +12,13 @@ <h1>Genome Annotation</h1>
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obtained via import of external data or use of predictive algorithms. This document outlines the
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steps involved in adding annotation to a < a href ="/info/genome/assemblies/ "> genome assembly</ a > :</ p >
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< ol >
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- < li > Import protein coding gene models. Ensembl Genomes does not carry out primary annotation
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- of protein-coding gene models. Gene models can be imported either from annotation in
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+ < li > Import protein coding gene models. Ensembl Genomes does not usually carry out primary annotation
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+ of protein-coding gene models. Gene models are imported either from annotation in
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< a href ="/info/genome/annotation/insdc_annotation/ "> INSDC</ a > sequence archive records or from
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other public sources, in which case < a href ="/info/genome/annotation/gff_annotation.html "> GFF</ a >
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is the preferred import format. In addition, Ensembl Genomes is involved in collaborations from
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- which < a href ="/info/genome/annotation/manual_annotation/ "> manual annotation</ a > is imported.</ li >
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+ which < a href ="/info/genome/annotation/manual_annotation/ "> manual annotation</ a > is imported. In 2023,
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+ Ensembl Bacteria released gene models generated using < a href ="https://academic.oup.com/bioinformatics/article/30/14/2068/2390517 "> Prokka</ a > .</ li >
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< li > Annotate < a href ="/info/genome/annotation/ncrna.html "> non-coding gene models</ a > </ li >
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< li > Annotate < a href ="/info/genome/annotation/repeat_features.html "> repeat features</ a > </ li >
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< li > Annotate < a href ="/info/genome/annotation/protein_features.html "> protein features</ a > </ li >
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